Background Learning to code is increasingly embedded in secondary and higher education curricula, where solving programming exercises plays an important role in the learning process and in formative and summative assessment. Unfortunately, students admit that copying code from each other is a common practice and teachers indicate they rarely use plagiarism detection tools. Objectives We want to lower the barrier for teachers to detect plagiarism by introducing a new source code plagiarism detection tool (Dolos) that is powered by state‐of‐the art similarity detection algorithms, offers interactive visualizations, and uses generic parser models to support a broad range of programming languages. Methods Dolos is compared with state‐of‐the‐art plagiarism detection tools in a benchmark based on a standardized dataset. We describe our experience with integrating Dolos in a programming course with a strong focus on online learning and the impact of transitioning to remote assessment during the COVID‐19 pandemic. Results and Conclusions Dolos outperforms other plagiarism detection tools in detecting potential cases of plagiarism and is a valuable tool for preventing and detecting plagiarism in online learning environments. It is available under the permissive MIT open‐source license at https://dolos.ugent.be. Implications Dolos lowers barriers for teachers to discover, prove and prevent plagiarism in programming courses. This helps to enable a shift towards open and online learning and assessment environments, and opens up interesting avenues for more effective learning and better assessment.

We present a privacy-friendly early-detection framework to identify students at risk of failing in introductory programming courses at university. The framework was validated for two different courses with annual editions taken by higher education students ( N = 2 080) and was found to be highly accurate and robust against variation in course structures, teaching and learning styles, programming exercises and classification algorithms. By using interpretable machine learning techniques, the framework also provides insight into what aspects of practising programming skills promote or inhibit learning or have no or minor effect on the learning process. Findings showed that the framework was capable of predicting students’ future success already early on in the semester.

Background Shotgun metagenomics yields ever richer and larger data volumes on the complex communities living in diverse environments. Extracting deep insights from the raw reads heavily depends on the availability of fast, accurate and user-friendly biodiversity analysis tools. Results Because environmental samples may contain strains and species that are not covered in reference databases and because protein sequences are more conserved than the genes encoding them, we explore the alternative route of taxonomic profiling based on protein coding regions translated from the shotgun metagenomics reads, instead of directly processing the DNA reads. We therefore developed the Unipept MetaGenomics Analysis Pipeline (UMGAP), a highly versatile suite of open source tools that are implemented in Rust and support parallelization to achieve optimal performance. Six preconfigured pipelines with different performance trade-offs were carefully selected, and benchmarked against a selection of state-of-the-art shotgun metagenomics taxonomic profiling tools. Conclusions UMGAP’s protein space detour for taxonomic profiling makes it competitive with state-of-the-art shotgun metagenomics tools. Despite our design choices of an extra protein translation step, a broad spectrum index that can identify both archaea, bacteria, eukaryotes and viruses, and a highly configurable non-monolithic design, UMGAP achieves low runtime, manageable memory footprint and high accuracy. Its interactive visualizations allow for easy exploration and comparison of complex communities.

Shotgun metagenomics is now commonplace to gain insights into communities from diverse environments, but fast, memory-friendly, and accurate tools are needed for deep taxonomic analysis of the metagenome data. To meet this need we developed UMGAP, a highly versatile open source command line tool implemented in Rust for taxonomic profiling of shotgun metagenomes. It differs from state-of-the-art tools in its use of protein code regions identified in short reads for robust taxonomic identifications, a broad-spectrum index that can identify both archaea, bacteria, eukaryotes and viruses, a non-monolithic design, and support for interactive visualizations of complex biodiversities.