No abstract

Environmental microbiota are becoming more conventional components of restoration ecology studies due to their functional importance in ecosystems. Studying these microbiota offers insight into how they respond to, and potentially drive, ecosystem restoration. However, microbes are everywhere and therefore they pose a risk to sample integrity via uncontrolled contamination, and many of these risks are introduced before entering a molecular facility. Field ecologists who have limited experience in microbial and/or molecular studies may lack the knowledge on how to mitigate microbial contamination risks and, accordingly, may find rigorous collection of microbial samples a daunting task. Here, we present a practical guide that builds on our previous paper to help manage the risks of microbial contamination when undertaking a microbiota restoration study prior to entering a molecular facility. We cover study design and planning, undertaking field sampling, and sample transport and storage. We hope to provide a useful and practical guide to restoration ecologists who wish to include a microbiota component in their studies. If done well, this inclusion offers improved research quality and ultimately enhanced restoration outcomes.

No abstract

Inoculating soils with microbiota that benefit the germination and growth of endangered plant species could improve their revegetation success and conservation status. While ecosystem degradation can disrupt beneficial plantsoil-microbial interactions, the prospect of reintroducing native plant-associated soil microbiota during revegetation could help to restore these important ecological links and assist the recovery of key species. We address the role of soil microbiota on germination and seedling fitness traits of the endangered Acacia whibleyana (Fabaceae) through a 17-week greenhouse experiment. Soil treatments included local soil, potting medium, three inoculation ratios (3:1, 1:1, 1:3 local soil: potting medium), sterilized local soil and sterilized potting medium. Soil sterilization reduced the time to first seed germination, indicating a role of soil microbiota on germination. The 1:1 whole soil inoculation saw reduced germination rates compared with either pure local or potting-medium treatments, and the slower germination times observed in live soils confirmed the strong influence of soil microbiota on the timing of germination. We report evidence that poor inoculation strategies can adversely impact germination of this endangered Acacia. Furthermore, our findings suggest that careful assessment of microbiota associated with A. whibleyana could help to improve germination and recruitment during its revegetation and conservation management.