By 50,000 years ago, it is clear that modern humans were capable of long-distance sea travel as they colonized Australia. However, evidence for advanced maritime skills, and for fishing in particular, is rare before the terminal Pleistocene/early Holocene. Here we report remains of a variety of pelagic and other fish species dating to 42,000 years before the present from Jerimalai shelter in East Timor, as well as the earliest definite evidence for fishhook manufacture in the world. Capturing pelagic fish such as tuna requires high levels of planning and complex maritime technology. The evidence implies that the inhabitants were fishing in the deep sea.

The paper reports fish bone and shellfish assemblages from Ulong Island in the Rock Islands of Palau, western Micronesia dating from $3100 to 500 BP. Use of marine resources in early prehistory appears to have been highly localised with increasing capture of outer-reef/pelagic taxa including shark and tuna after 1000 BP. Local stocks of large Tridacnids were depleted during initial human use of Ulong Island, and there is a size decrease in Scarus sp. remains consistent with pressure on the inshore fishery, especially after establishment of permanent stonework villages in late prehistory. Comparison of archaeological assemblages of fish bone from other Rock Islands dated to after 2000 BP indicate that the captured fish species and major capture methods differ between sites and likely reflect local marine environments at each location.

Previous research indicates that human genetic diversity in Wallacea—islands in present-day Eastern Indonesia and Timor-Leste that were never part of the Sunda or Sahul continental shelves—has been shaped by complex interactions between migrating Austronesian farmers and indigenous hunter–gatherer communities. Yet, inferences based on present-day groups proved insufficient to disentangle this region’s demographic movements and admixture timings. Here, we investigate the spatio-temporal patterns of variation in Wallacea based on genome-wide data from 16 ancient individuals (2600–250 years BP) from the North Moluccas, Sulawesi and East Nusa Tenggara. While ancestry in the northern islands primarily reflects contact between Austronesian- and Papuan-related groups, ancestry in the southern islands reveals additional contributions from Mainland Southeast Asia that seem to predate the arrival of Austronesians. Admixture time estimates further support multiple and/or continuous admixture involving Papuan- and Asian-related groups throughout Wallacea. Our results clarify previously debated times of admixture and suggest that the Neolithic dispersals into Island Southeast Asia are associated with the spread of multiple genetic ancestries.

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