Background: Soybean (Glycine max L. Merr.) is an important nitrogen-fixing crop that provides much of the world's protein and oil. However, the available tools for investigation of soybean gene function are limited. Nevertheless, chemical mutagenesis can be applied to soybean followed by screening for mutations in a target of interest using a strategy known as Targeting Induced Local Lesions IN Genomes (TILLING). We have applied TILLING to four mutagenized soybean populations, three of which were treated with ethyl methanesulfonate (EMS) and one with Nnitroso-N-methylurea (NMU).

The North American creosote bush (Larrea tridentata, Zygophyllaceae) is a widespread and ecologically dominant taxon of North American warm deserts. The species is comprised of diploid, tetraploid, and hexaploid populations, and touted as a classical example of an autopolyploid taxonomic complex. Here we use flow cytometry and DNA sequence data (non-coding cpDNA and nuclear ribosomal DNA) to evaluate spatial and evolutionary relationships among cytotype races, as well as the origins of the species from its South American ancestors. We find the geographic distribution of North American cytotypes to be highly structured, with limited co-occurrence within populations. Diploids reside only in the Chihuahuan Desert, as reported in previous biosystematic surveys, but tetraploid and hexaploid populations interdigitate along the margins of the Sonoran and Mojave Deserts. In phylogenetic analyses, North American plants comprise a monophyletic grouping that is sister to the South American diploid species, L. divaricata. North American populations exhibit genetic signatures of rapid demographic expansion, including a star-shaped genealogy, unimodal distribution of pairwise haplotype differences, and low genetic structure. Nonetheless, polyploid cytotypes are consistently distinguished from diploid cytotypes by a cpDNA indel character, suggesting a single origin of tetraploidy in the species. These findings suggest a recent origin of the North American creosote bush via long distance dispersal, with establishment of polyploid populations accompanying its rapid spread through the Northern Hemisphere.

Diploid, tetraploid, and hexaploid cytotypes of L. tridentata are segregated by environmental distributions and flowering phenology in contact zones, with diploid and tetraploid populations having corresponding differences in genetic structure.

Polyploidy is a major mechanism of chromosome evolution and speciation in flowering plants. Delineation of polyploid populations as species or subspecies is complicated because of the uncertainties of distinguishing closely related diploids and polyploids in field conditions. Here we evaluate the practical identification of polyploids-using geographic distributions and morphological features-in the North American creosote bush (Larrea tridentata, Zygophyllaceae). Regarded as a classical autopolyploid complex, L. tridentata comprises diploids, tetraploids, and hexaploids distributed throughout the Chihuahuan, Sonoran, and Mojave Deserts. Transect sampling on cytotype range boundaries revealed strong spatial structuring of the chromosome races, and infrequent sympatry, over small spatial scales (\50 km). Inter-cytotype hybrids were rare, with putative triploids and pentaploids comprising \1 % of the sampled plants (N = 1,197). In morphometric analyses of stem, flower, and leaf characteristics (N = 14 traits), we found significant ploidy effects in several cytotype comparisons;reproductive structures and foliage characteristics were particularly discriminatory. Significant transect and ploidy 9 transect effects for most traits suggest, however, that environmental and genic factors influence plant architecture and morphology. Nonetheless, discriminant function analysis with a combined morphometric data set correctly assigned 68.9 % of plants to ploidal level. Pollen diameters increased significantly with ploidal level, providing another potentially informative trait for comparisons of reproductive plants. Taken together, the spatial distribution and morphometric data presented here suggest that the majority of L. tridentata plants could, in principle, be assigned to cytotype in the field. However, because of potential misclassifications, we suggest recognition of the L. tridentata cytotypes as subspecies.