New peptide-containing alkanethiol self-assembled monolayers (SAMs) on gold have been prepared. These monolayers exhibit extended interchain hydrogen bonding and have well-ordered alkane chains. Elemental composition and thickness of the monolayer are obtained by X-ray photoelectron spectroscopy. External reflective IR spectroscopy shows that the SAMs are uniaxial and possess microcrystalline, densely packed methylene chains with hydrogen bonding between neighboring amide moieties. These highly ordered monolayers form excellent electrochemical spacers as characterized by electrochemical blocking studies and double-layer capacitance measurements. The well-defined structure makes this system a promising prototype for systematic investigations of long-range electron transfer through amide bonds.

Stratified amide-containing self-assembled monolayers (SAMs) provide opportunities for investigating the fundamental dependence of supramolecular structure upon molecular constitution. We report a series of amide-containing alkanethiol SAMs (C n -1AT/Au, n = 9, 11−16, 18) in which the hydrophobic overlayer thickness is systematically varied and the thickness of the polar region is held constant. The results from X-ray photoelectron spectroscopy, contact angle goniometry, reflective IR spectroscopy, and electrochemical measurements provide a consistent structural picture of the series. The amide underlayers in all the SAMs are well-ordered and extensively hydrogen bonded. However, the alkyl chains are disordered below n = 15. Comparison of the assembly structures shows that the chain length threshold for alkyl ordering is several methylenes higher than in n-alkanethiol SAMs. This indicates that alkyl chains adjacent to an amide underlayer are destabilized as compared to n-alkanethiols and that the amide underlayer destructively interferes with alkyl close packing as compared to the Au(111)−sulfur template. However, the amide regions of the SAMs are all well-ordered, showing that the amide sublayer acts as a “template” that is independent of alkyl chain length. The amide region dominates over gold−sulfur epitaxy in establishing the structure of these assemblies, and the amide−alkyl boundary provides an example of a “rigid−elastic” buried organic interface. Implications of these studies for molecular control of bulk properties, lipid-linked protein structure and function, buried organic interfaces in other systems, rationally designed ordered multilayers, and hybrid supramolecular systems are discussed.

We report the phase separation of a self-assembled monolayer formed from a binary mixture of adsorbates, n-decanethiol, and an amide-containing alkanethiol of similar length (3-mercapto-N-nonylpropionamide), as studied by scanning tunneling microscopy. While mixtures of n-alkanethiols of similar length (i.e., n-decanethiol and n-dodecanethiol) show no phase separation, the introduction of a hydrogen-bonding functionality buried deep within the film induces the formation of single-component domains on the nanometer scale. Phase separation occurs at all relative compositions studied, and for these molecules maintains the same exposed terminal functionality across the entire film. In nonequimolar concentrations of adsorbates, we observe that the solution component present in greater concentration will dominate the composition of the adsorbed monolayer in super proportion to that in solution, consistent with enthalpic contributions from both the solvent and intermolecular interactions of adsorbates.

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