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SUMMARYIn this paper we present a three-dimensional Navier-Stokes solver for incompressible two-phase flow problems with surface tension and apply the proposed scheme to the simulation of bubble and droplet deformation. One of the main concerns of this study is the impact of surface tension and its discretization on the overall convergence behavior and conservation properties.Our approach employs a standard finite difference/finite volume discretization on uniform Cartesian staggered grids and uses Chorin's projection approach. The free surface between the two fluid phases is tracked with a level set (LS) technique. Here, the interface conditions are implicitly incorporated into the momentum equations by the continuum surface force method. Surface tension is evaluated using a smoothed delta function and a third-order interpolation. The problem of mass conservation for the two phases is treated by a reinitialization of the LS function employing a regularized signum function and a global fixed point iteration. All convective terms are discretized by a WENO scheme of fifth order. Altogether, our approach exhibits a second-order convergence away from the free surface. The discretization of surface tension requires a smoothing scheme near the free surface, which leads to a first-order convergence in the smoothing region.We discuss the details of the proposed numerical scheme and present the results of several numerical experiments concerning mass conservation, convergence of curvature, and the application of our solver to the simulation of two rising bubble problems, one with small and one with large jumps in material parameters, and the simulation of a droplet deformation due to a shear flow in three space dimensions. Furthermore, we compare our three-dimensional results with those of quasi-two-dimensional and twodimensional simulations. This comparison clearly shows the need for full three-dimensional simulations of droplet and bubble deformation to capture the correct physical behavior.

The SIB Swiss Institute of Bioinformatics (www.isb-sib.ch) provides world-class bioinformatics databases, software tools, services and training to the international life science community in academia and industry. These solutions allow life scientists to turn the exponentially growing amount of data into knowledge. Here, we provide an overview of SIB's resources and competence areas, with a strong focus on curated databases and SIB's most popular and widely used resources. In particular, SIB's Bioinformatics resource portal ExPASy features over 150 resources, including UniProtKB/Swiss-Prot, ENZYME, PROSITE, neXtProt, STRING, UniCarbKB, SugarBindDB, SwissRegulon, EPD, arrayMap, Bgee, SWISS-MODEL Repository, OMA, OrthoDB and other databases, which are briefly described in this article.

In this paper we combine the Parareal parallel-in-time method together with spatial parallelization and investigate this space-time parallel scheme by means of solving the three-dimensional incompressible Navier-Stokes equations. Parallelization of time stepping provides a new direction of parallelization and allows to employ additional cores to further speed up simulations after spatial parallelization has saturated. We report on numerical experiments performed on a Cray XE6, simulating a driven cavity flow with and without obstacles. Distributed memory parallelization is used in both space and time, featuring up to 2,048 cores in total. It is confirmed that the space-time-parallel method can provide speedup beyond the saturation of the spatial parallelization.

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