Complexes between cobalt(III) and eight different
1,4,7,10-tetraazacyclododecane (cyclen) as well as
two
tris(3-aminopropyl)amine (trpn) derivatives are reported with
varying numbers and structures of peralkylammonium
groups in side chains of the ligands. The presence of additional
positive charges has small effects on hydrolysis
rates of nitrophenyl- and bis(nitrophenyl)phosphate esters
but leads to substantially enhanced cleavage of plasmid
DNA. Increasing the number of the charged side groups and/or their
distance to the metal ion center provides for
better binding to the DNA groove, as shown also by affinity
measurements with calf-thymus DNA. In line with
this, saturation kinetics of plasmid DNA cleavage yield a corresponding
increase of efficiency in Michaelis−Menten-type K
M values, with rather constant
k
cat parameters. A binuclear
cobalt complex with two cyclen centers separated
by a
−(CH2)6-N+(CH3)2-(CH2)6-N+(CH3)2-(CH2)6−
spacer shows, with only 5 × 10-5 M catalyst
concentration, the
largest known rate enhancement factor of >107
(corresponding to >1011 at 1 M) against DNA; incubation
with 0.05
mM at 37 °C for only 2 h leads to almost complete cleavage without
appearance of products typical for redox
cleavage. These results are in contrast to experiments with
corresponding copper(II) complexes with added
hydrogen
peroxide, which has no effect with corresponding Co, Zn, Cd, or Ni
complexes.
Saturation kinetics are measured with all lanthanides
and bis(nitrophenyl) phosphate BNPP as substrate.
They
show rather constant K
M values; the
k
cat values, however, increase by up to 66 times
for La3+ to Er3+ and decrease
again for Yb3+ and Lu3+. With all
lanthanides, hydrolysis of the intermediate mononitrophenyl phosphate
NPP
is 2−30 times faster than that of BNPP. The
k
cat values measured with BNPP correlate with
the ion diameter of
the lanthanides, in line with accepted mechanisms but with the notable
exception of the higher lanthanides. A
similar correlation holds for the cleavage rates with plasmid DNA, with
striking differences again observed with
the higher lanthanides, however. Thus, a concentration increase
from 5 × 10-5 to 1 ×
10-2 M leads to 64% and
84% more DNA cleavage with La3+ and Pr3+,
respectively, but to up to 68% less DNA cleavage,
respectively,
but with Yb3+, Tm3+ or Lu3+.
In contrast to the BNPP cleavage, saturation kinetics derived
k
cat values with
DNA change little with the used cation, which on the other hand led to
larger variations in the K
M
parameters.
Preliminary UV and CD studies with plasmid DNA indicate
lanthanide-induced conformational changes with
pseudo-first-order rate constants 10−100 times higher than the
cleavage rate under the same conditions. Again,
Yb3+ shows different effects than Eu3+.
The unusual behavior of the higher lanthanides is discussed on the
basis
of cation clustering, which, in contrast to earlier assumptions by
Bamann et al., leads to diminished activities.
Addition of salts such as of NaCl or MgCl2 leads to
distinct decrease of catalytic effects of for instance
Eu3+.
The corresponding rates correlate well with Debye−Hückel
ionic strength parameters. These as well as the
effects
of added amines are in line with a simple competition mechanism of the
added cations for the anionic substrates.
The catalysis of plasmid ds-DNA cleavage by lanthanoid cations and their complexes is characterized by saturation kinetics; addition of polyamines or cryptand does not hinder catalysis, which can be enhanced to a total factor of 107 by alcoholic co-substrates such as glycerol, or by intercalating ligands.The hydrolytic cleavage of nucleic acids by lanthanides' is of considerable interest, in particular for possible biotechnological applications. The extremely long half-life time of DNA approaching more than 100 million years for total hydrolysis* makes the development of supramolecular catalysts a particular challenge. With few exceptions,3 the up to date available chemical nucleases cleave DNA by radical processes$ with the disadvantage of less discriminate reactions of e.g. highly reactive hydroxy radicals, and of concomitant partial destruc-Ln3+:
Complex 2a crystallizes from water at 25 C in the triclinic space group Pi (no. 2) with u = 685.1(2). h = 880.6(4), c =1108.4(3) pm. 2 =109.77(1). {j = 96.36(2). 7 = 93.45(2) . Z = 2. V = 622 x 10" pm'. p ',,, id = VCH ~~~/ (~g s g~~. s e / / . r~/~(~~i nihH. 0-69451 Wwn/i&ii, 1993
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