As for many enzymes, the enzymatic pathway of triosephosphate isomerase (TIM) includes the partially rate determining motion of an active site loop (loop 6, residues 166-176), which must remain closed during chemistry but must open just before product release. The motion of this loop was monitored using laser induced temperature-jump relaxation spectroscopy at nanosecond to millisecond time resolution. Trp168 in the hinge of the mobile loop served as a fluorophore reporter in a mutant of the yeast enzyme. The opening rate was studied as a function of the concentration of glycerol 3-phosphate, a substrate surrogate. Monoexponential kinetics were observed; assuming a simple two-step ligand release mechanism involving an encounter complex intermediate, the time scales of loop opening and closing were derived. The opening rate of the loop at 25 degrees C was determined to be 2500 +/- 1000 s(-1), in remarkable agreement with solution and solid state NMR measurements. The closing rate at the same temperature was 46,700 +/- 1800 s(-1). The rates were also studied as a function of the sample temperature following the jump. Enthalpies of activation of the loop motion, DeltaH(close) and DeltaH(open), were estimated to be 13.8 and 14.1 kcal/mol, respectively. The enthalpy of dissociation estimated from the kinetic studies is in reasonable agreement with steady-state values. Moreover, the enthalpy was dissected, for the first time, into components associated with ion binding and with protein conformational change. The enthalpy of the release reaction appeared to have a substantial contribution from the dissociation of the ligand from the encounter complex, found to be endothermic at 6 kcal/mol. In contrast, the population ratio of the open to closed loop conformations is found to favor the closed conformation but to be substantially less temperature dependent than the release step. Preliminary data of other ligands show that G3P behavior resembles that of the substrate but differs from 2-phosphoglycolate, a tight binding inhibitor, and phosphate. This study represents one of the first detailed comparisons between NMR and fluorescence based probes of protein motion and results in good agreement between the methods. The data in aggregate support a model in which the rate of the loop opening for TIM is dependent on the ligand and results in opening rates in the presence of the product that are comparable to enzymatic throughput, kcat.

The spectroscopic properties of spheroidene and a series of spheroidene analogs with extents of π-electron conjugation ranging from 7 to 13 carbon−carbon double bonds were studied using steady-state absorption, fluorescence, fluorescence excitation, and time-resolved absorption spectroscopy. The spheroidene analogs studied here were 5‘,6‘-dihydro-7‘,8‘-didehydrospheroidene, 7‘,8‘-didehydrospheroidene, and 1‘,2‘-dihydro-3‘,4‘,7‘,8‘-tetradehydrospheroidene and taken together with data from 3,4,7,8-tetrahydrospheroidene, 3,4,5,6-tetrahydrospheroidene, 3,4-dihydrospheroidene already published (DeCoster, B.; Christensen, R. L.; Gebhard, R.; Lugtenburg, J.; Farhoosh, R.; Frank, H. A. Biochim. Biophys. Acta 1992, 1102, 107) provide a systematic series of molecules for understanding the molecular features that control energy transfer to bacteriochlorophyll in photosynthetic bacterial light-harvesting complexes. All of the molecules were purified by high-pressure liquid chromatographic techniques prior to the spectroscopic experiments. The absorption spectra of the molecules were observed to red-shift with increasing extent of π-electron conjugation. The room temperature fluorescence data show a systematic crossover from dominant S1 → S0 (2Ag → 11Ag) emission to dominant S2 → S0 (11Bu → 11Ag) with increasing extent of conjugation. The S2 fluorescence quantum yields of all the carotenoids in the series were measured here and indicate that 3,4-dihydrospheroidene with nine carbon−carbon double bonds has an S2 quantum yield of (2.7 ± 0.3) × 10-4 which is the highest value in the series. The lifetimes of the S1 states of the molecules were determined from time-resolved transient absorption spectroscopy and found to decrease as the conjugated chain length increases. The transient data are discussed in terms of the energy gap law for radiationless transitions which allows a prediction of the S1 energies of the molecules. The implications of these results for the process of light harvesting by carotenoids in photosynthesis are discussed.