Metabotropic glutamate receptors of class C GPCRs exist
as constitutive
dimers, which play important roles in activating excitatory synapses
of the central nervous system. However, the activation mechanism induced
by agonists has not been clarified in experiments. To address the
problem, we used microsecond all-atom molecular dynamics (MD) simulation
couple with protein structure network (PSN) to explore the glutamate-induced
activation for the mGluR1 homodimer. The results indicate that glutamate
binding stabilizes not only the closure of Venus flytrap domains but
also the polar interaction of LB2–LB2, in turn keeping the
extracelluar domain in the active state. The activation of the extracelluar
domain drives transmembrane domains (TMDs) of the two protomers closer
and induces asymmetric activation for the TMD domains of the two protomers.
One protomer with lower binding affinity to the agonist is activated,
while the other protomer with higher binding energy is still in the
inactive state. The PSN analysis identifies the allosteric regulation
pathway from the ligand-binding pocket in the extracellular domain
to the G-protein binding site in the intracellular TMD region and
further reveals that the asymmetric activation is attributed to a
combination of trans-pathway and cis-pathway regulations from two glumatates, rather than a single activation
pathway. These observations could provide valuable molecular information
for understanding of the structure and the implications in drug efficacy
for the class C GPCR dimers.
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