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Lower Granite Dam is the last dam that federally protected Snake River salmonids Oncorhynchus spp. must ascend during their spawning migration. The dam has an adult fish ladder equipped with a trapping system to facilitate fisheries research and hatchery broodstock collection. There are three possible passage routes through the adult ladder: trapped, shunted, and free passage. During the adult trapping season, all fish must swim through 0.305‐m shunt pipes outfitted with PIT tag arrays that allow the selection of fish for trapping. Selected fish use the “trapped” route and are kept in a holding area for up to 20 h before being sampled and returned to the ladder. Unselected fish use the “shunted” route and immediately resume upstream migration after swimming through the pipes. When the trap is not in operation, the shunted route is inaccessible, and all fish use the “free passage” route to ascend the ladder without additional impediment. In 2016, a temporary change in ladder operations permitted free passage for a portion of the trapping season. Our study used this rare opportunity to evaluate how different passage routes affect in‐ladder transit time and upstream homing success for five salmonid stocks: Sockeye Salmon Oncorhynchus nerka; steelhead O. mykiss; and spring‐, summer‐, and fall‐run Chinook Salmon O. tshawytscha. In 2016, only Sockeye Salmon and spring‐ and summer‐run Chinook Salmon were given access to free passage, and we found evidence that free passage increased subsequent detection at natal sites upstream. An expanded analysis of shunted versus trapped fish during the years 2012–2016 found no difference in rates of detection to home tributaries by route of passage for any of the five fish stocks examined.

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