We present results of the correlation analysis of distributions of the presence/absence of short nucleotide subsequences of different length ('n-mers', n = 5-20) in more than 1500 microbial and virus genomes, together with five genomes of multicellular organisms (including human). We calculate whether a given n-mer is present or absent (frequency of presence) in a given genome, which is not the usually calculated number of appearances of n-mers in one or more genomes (frequency of appearance). For organisms that are not close relatives of each other, the presence/absence of different 7-20mers in their genomes are not correlated. For close biological relatives, somecorrelation of the presence of n-mers in this range appears, but is not as strong as expected. Suppressed correlations among the n-mers present in different genomes leads to the possibility of using random sets of n-mers (with appropriately chosen n) to discriminate genomes of different organisms and possibly individual genomes of the same species including human with a low probability of error.
We construct a Wigner distribution function for finite data sets. It is based on a finite optical system; a linear wave guide where the finite number of discrete sensors is equal to the number of modes which the guide can carry. The dynamical group for this model is SU(2) and the wave functions are sets of N=2l+1 data points. The Wigner distribution function assigns classical c-numbers to the operators of position, momentum, and wave guide mode.
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