The endothelium expresses a large repertoire of genes under apparent transcriptional control of biomechanical forces, many of which are neither cell-type nor flow specific. We set out to identify genes that are uniquely flow responsive in human vascular endothelial cells. Transcriptional profiling using commercial DNA microarrays identified 12 of 18 000 genes that were modulated at least 5-fold after 24 hours of steady laminar flow (25 dyne/ cm 2 ). After a 7-day exposure to unidirectional pulsatile flow (19 ؎ 12 dyne/cm 2 ), only 3 of 12 remained elevated at least 5-fold. A custom microarray of ϳ300 vascular cell-related gene fragments was constructed, and expression analysis revealed that many flow-induced genes are also induced by at least one of the following agents: tumor necrosis factor-␣ (TNF-␣), interleukin-1 (IL-1), transforming growth factor-, vascular endothelial growth factor, or thrombin, indicating a more general role in adaptive or stress responses. Most flow-induced genes were also induced by TNF-␣ but not IL-1, suggesting the involvement of reactive oxygen species. A limited panel of genes that are unique for flow-exposed cultures was identified, including lung Krü ppellike factor (LKLF/KLF2) and cytochrome P450 1B1 (CYP1B1). In marked contrast, both these genes were substantially repressed by TNF-␣. LKLF but not CYP1B1 mRNA was detected exclusively in the vascular endothelium of healthy human aorta by in situ hybridization and appeared to be flow regulated. To date LKLF is the first endothelial transcription factor that is uniquely induced by flow and might therefore be at the molecular basis of the physiological healthy, flow-exposed state of the endothelial cell.
The rainforests of Amazonia comprise some of the most biologically diverse ecosystems on Earth. Despite this high biodiversity, little is known about how landscape changes that took place in deep history have affected the assembly of its species, and whether the impact of such changes on biodiversity can still be observed. Here, we present a hypothesis to explain our observation that plants typical of Neotropical coastal habitats also occur in western Amazonia, in some cases thousands of kilometres away from the coast. Evidence on their current distribution, dispersal biology and divergence times estimated from molecular phylogenies suggest that these plants may be the legacy of the large marine‐influenced embayment that dominated the area for millions of years in the Neogene. We hypothesize that coastal plants dispersed along the shores of this embayment and persisted as inland relicts after the marine incursion(s) retreated, probably with the aid of changes in soil conditions caused by the deposition of marine sediments. This dispersal corridor may also have facilitated the colonization of coastal environments by Amazonian lineages. These scenarios could imply an unexpected coastal source that has contributed to Amazonia's high floristic diversity and led to disjunct distributions across the Neotropics. We highlight the need for future studies and additional evidence to validate and shed further light on this potentially important pattern.
We dedicate this paper to the life and work of Gloria Galeano (1958( -2016, botanist and outstanding palm researcher. ABSTRACTAim We analysed in detail a past marine incursion event in north-western Amazonia and measured its effect on the forest composition. We also determined the sediment provenance in the fluvio-estuarine system and reconstructed the overall floral composition of the Amazon lowland forest during the Miocene climatic optimum.Location A 60-m-thick sedimentary succession situated along the Caquet a River in Colombian Amazonia (0.77°S; 71.97°W).Methods Palynological, geochemical and statistical analyses were performed on samples from organic-rich sediments. ResultsThe lower section was formed by fluvial floodplain deposits of Andean provenance rich in pollen of Malvacipolloides maristellae (aff. Abutilon) and Rhoipites guianensis (aff. Vasivaea). The middle section was formed by fluvial channel and estuarine swamp deposits of central Venezuelan provenance dominated by pollen of Mauritiidites franciscoi (Mauritia). Towards the top, the swamp deposits represent an estuarine floodplain with aquatic biomarkers, marine palynomorphs and mangrove pollen. The succession ended with fluvial floodplain deposits of central to southern Venezuelan origin with R. guianensis as dominant pollen type. Palynological diversity was high throughout the section with Andean-and Venezuelan-derived sediments each with their characteristic taxa. Tropical rain forest taxa, such as Arecaceae, Fabaceae, Sapotaceae, Malpighiaceae and Bombacoideae, were common in these sediments, although taxa adapted to drier conditions also occurred. We provide a 'figshare' link to an image library of selected taxa, as well as the raw counts and processed data. Main conclusionsThe fluvio-estuarine system was of mixed origin with sediments and palynomorphs from the emerging Andes, but also from an area situated in the modern Orinoco Basin. Marine influence was linked to the Venezuelan source area and thus of indisputable Caribbean origin. Overall, a mixed forest with drought-resistant components existed in the drainage system during the Miocene climatic optimum. Our data provide a novel insight into the composition of the tropical lowland forest and the environments in northwestern Amazonia prior to the main uplift of the central and northern Andes.
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