This study aimed to isolate lactic acid bacteria (LAB) from wheat rhizosphere, to characterize their in vitro plant growth promoting activities and to differentiate plant-associated LAB from those associated with foods or human disease through comparative genomic analysis. Lactococcus lactis subsp. lactis and Enterococcus faecium were isolated using de Man-Rogosa-Sharpe (MRS) and Glucose Yeast Peptone (GYP) as enrichment culture media. Comparative genomic analyses showed that plant-associated LAB strains were enriched in genes coding for bacteriocin production when compared to strains from other ecosystems. Isolates of L. lactis and E. faecium did not produce physiologically relevant concentrations of the phyto-hormone indolacetic acid. All isolates solubilized high amount of phosphate and 12 of 16 strains solubilized potassium. E. faecium LB5, L. lactis LB6, LB7, and LB9 inhibited the plant pathogenic Fusarium graminearum to the same extent as two strains of Bacillus sp. However, the antifungal activity of the abovementioned LAB strains depended on the medium of cultivation and a low pH while antifungal activity of Bacillus spp. was independent of the growth medium and likely relates to antifungal lipopeptides. This study showed the potential of rhizospheric LAB for future application as biofertilizers in agriculture.

This research aimed at investigating the isolation and identification of bacterial strains with biological nitrogen-fixing capability and phosphate, potassium, and zinc solubilization activities from a durum wheat field under two different tillage practices including 10 years of conventional tillage (CT) and no-tillage (NT) practices. Attempts were also extended to estimate their relative abundances in the soil as well as to develop accurate mathematical models in determining the effect of different temperatures, NaCl concentrations and pH on the growth, and activity of selected isolates. Twelve effective bacterial strains, including Pseudomonas, Acinetobacter, and Comamonas genera, were identified with a great potential to solubilize the insoluble forms of phosphate (from 11.1 to 115.5 mg l−1 at pH 8), potassium (from 32.2 to 35.6 mg l−1 at pH 7), and zinc (from 1.11 to 389.90 mg l−1 at pH 9) as well as to fix N2 gas (from 19.9 to 25.2 mg l−1). To our knowledge, this is the first report of the ability of Comamonas testosteroni and Acinetobacter pittii to fix nitrogen and to solubilize insoluble potassium compound, respectively. Three families, Moraxellaceae, Pseudomonadaceae, and Comamonadaceae, showed a higher percentage of abundance in the NT samples as compared to the CT, but only significant difference was observed in the relative abundance of Pseudomonadaceae (P < 0.01). These strains could be definitively recommended as inoculants to promote plant growth in the wide ranges of pH, salinity levels (with maximum growth and complete inhibition of growth from 0.67–0.92% to 3.5–9.3% NaCl, respectively), and temperatures (2.1–45.1 °C).

The current study was performed to investigate the effects of three different long-term land use intensities on adjacent soil plots, namely a winter wheat field, a grass-covered vineyard, and a cherry farm, on soil biochemical, microbial, and molecular parameters. The results showed the maximum content of soil organic matter (SOM) and microbial biomass carbon (MBC) observed in the grass-covered vineyard. Basal respiration (BSR) and the cumulated respiration (CSR) after 25 days of incubation were significantly higher in the grass-covered vineyard and cherry farm, respectively (BSR 11.84 mg CO2–C kg−1 soil d−1, CSR 226.90 mg CO2–C kg−1 soil). Grass-covered vineyard showed the highest soil biological fertility index (BFI) score (20) and ranked in the class IV (good) of soil biological fertility. Cereal field and cherry farm had lower BFI scores and the corresponding BFI class was III (medium). In addition, the maximum ribosomal RNA copy number and the highest abundance of oligotrophic bacterial groups (25.52% Actinobacteria, 3.45% Firmicutes, and 1.38% Acidobacteria) were observed in the grass-covered vineyard. In conclusion, the grass-covered vineyard is a more conservative system and could have a large potential to improve total carbon storage in soil, mainly because of the cover crop residue management and the low soil perturbation through the no-tillage system.

The present research aimed at evaluating the harmless dissipation of excess excitation energy by durum wheat (Triticum durum Desf.) leaves in response to the application of a bacterial consortium consisting of four plant growth-promoting bacteria (PGPB). Three pot experiments were carried out under non-stress, drought (at 40% field capacity), and salinity (150 mM NaCl) conditions. The results showed that drought and salinity affected photo-protective energy dissipation of photosystem II (PSII) increasing the rate of non-photochemical chlorophyll fluorescence quenching (NPQ (non-photochemical quenching) and qCN (complete non-photochemical quenching)), as well as decreasing the total quenching of chlorophyll fluorescence (qTQ), total quenching of variable chlorophyll fluorescence (qTV) and the ratio of the quantum yield of actual PSII photochemistry, in light-adapted state to the quantum yield of the constitutive non-regulatory NPQ (PQ rate). Our results also indicated that the PGPB inoculants can mitigate the adverse impacts of stresses on leaves, especially the saline one, in comparison with the non-fertilized (control) treatment, by increasing the fraction of light absorbed by the PSII antenna, PQ ratio, qTQ, and qTV. In the light of findings, our beneficial bacterial strains showed the potential in reducing reliance on traditional chemical fertilizers, in particular in saline soil, by improving the grain yield and regulating the amount of excitation energy.