This paper explores cutting-edge deep learning methods for information extraction from medical imaging free text reports at a multi-institutional scale and compares them to the state-of-the-art domain-specific rule-based system -PEFinder and traditional machine learning methods -SVM and Adaboost. We proposed two distinct deep learning models -(i) CNN Word -Glove, and (ii) Domain phrase attention-based hierarchical recurrent neural network (DPA-HNN), for synthesizing information on pulmonary emboli (PE) from over 7,370 clin-ical thoracic computed tomography (CT) free-text radiology reports collected from four major healthcare centers. Our proposed DPA-HNN model encodes domain-dependent phrases into an attention mechanism and represents a radiology report through a hierarchical RNN structure composed of word-level, sentence-level and document-level representations. Experimental results suggest that the performance of the deep learning models that are trained on a single institutional dataset, are better than rule-based PEFinder on our multi-institutional test sets. The best F1 score for the presence of PE in an adult patient population was 0.99 (DPA-HNN) and for a pediatrics population was 0.99 (HNN) which shows that the deep learning models being trained on adult data, demonstrated generalizability to pediatrics population with comparable accuracy. Our work suggests feasibility of broader usage of neural network models in automated classification of multi-institutional imaging text reports for a variety of applications including evaluation of imaging utilization, g

This paper is concerned with automatic generation of all possible questions from a topic of interest. Specifically, we consider that each topic is associated with a body of texts containing useful information about the topic. Then, questions are generated by exploiting the named entity information and the predicate argument structures of the sentences present in the body of texts. The importance of the generated questions is measured using Latent Dirichlet Allocation by identifying the subtopics (which are closely related to the original topic) in the given body of texts and applying the Extended String Subsequence Kernel to calculate their similarity with the questions. We also propose the use of syntactic tree kernels for the automatic judgment of the syntactic correctness of the questions. The questions are ranked by considering both their importance (in the context of the given body of texts) and syntactic correctness. To the best of our knowledge, no previous study has accomplished this task in our setting. A series of experiments demonstrate that the proposed topic-to-question generation approach can significantly outperform the state-of-the-art results.

whole leaf clearing and staining technique used in specificity studies of rust fungi is described. The method is effective on a large number of plant/rust fungus associations.

We present a novel deep learning architecture to address the natural language inference (NLI) task. Existing approaches mostly rely on simple reading mechanisms for independent encoding of the premise and hypothesis. Instead, we propose a novel dependent reading bidirectional LSTM network (DR-BiLSTM) to efficiently model the relationship between a premise and a hypothesis during encoding and inference. We also introduce a sophisticated ensemble strategy to combine our proposed models, which noticeably improves final predictions. Finally, we demonstrate how the results can be improved further with an additional preprocessing step. Our evaluation shows that DR-BiLSTM obtains the best single model and ensemble model results achieving the new state-of-the-art scores on the Stanford NLI dataset.