Summary
Background
Rare genetic variants cause pulmonary arterial hypertension, but the contribution of common genetic variation to disease risk and natural history is poorly characterised. We tested for genome-wide association for pulmonary arterial hypertension in large international cohorts and assessed the contribution of associated regions to outcomes.
Methods
We did two separate genome-wide association studies (GWAS) and a meta-analysis of pulmonary arterial hypertension. These GWAS used data from four international case-control studies across 11 744 individuals with European ancestry (including 2085 patients). One GWAS used genotypes from 5895 whole-genome sequences and the other GWAS used genotyping array data from an additional 5849 individuals. Cross-validation of loci reaching genome-wide significance was sought by meta-analysis. Conditional analysis corrected for the most significant variants at each locus was used to resolve signals for multiple associations. We functionally annotated associated variants and tested associations with duration of survival. All-cause mortality was the primary endpoint in survival analyses.
Findings
A locus near
SOX17
(rs10103692, odds ratio 1·80 [95% CI 1·55–2·08], p=5·13 × 10
–15
) and a second locus in
HLA-DPA1
and
HLA-DPB1
(collectively referred to as
HLA-DPA1/DPB1
here; rs2856830, 1·56 [1·42–1·71], p=7·65 × 10
–20
) within the class II MHC region were associated with pulmonary arterial hypertension. The
SOX17
locus had two independent signals associated with pulmonary arterial hypertension (rs13266183, 1·36 [1·25–1·48], p=1·69 × 10
–12
; and rs10103692). Functional and epigenomic data indicate that the risk variants near
SOX17
alter gene regulation via an enhancer active in endothelial cells. Pulmonary arterial hypertension risk variants determined haplotype-specific enhancer activity, and CRISPR-mediated inhibition of the enhancer reduced
SOX17
expression. The
HLA-DPA1/DPB1
rs2856830 genotype was strongly associated with survival. Median survival from diagnosis in patients with pulmonary arterial hypertension with the C/C homozygous genotype was double (13·50 years [95% CI 12·07 to >13·50]) that of those with the T/T genotype (6·97 years [6·02–8·05]), despite similar baseline disease severity.
Interpretation
This is the first study to report that common genetic variation at loci in an enhancer near
SOX17
and in
HLA-DPA1/DPB1
is associated with pulmonary arterial hypertension. Impairment of SOX17 function might be more common in pulmonary arterial hypertension than suggested by rare mutations in
...
Atrial septal defects (ASDs) are one of the most common heart defects diagnosed in the adult population. If left unrepaired, they may lead to significant complications including right heart volume overload, pulmonary complications, and heart failure. Percutaneous transcatheter closure by use of an occluder device is clinically indicated for most patients with a secundum ASD and who are symptomatic. Although this procedure is safe, in rare instances, complications may be encountered, including atrial wall perforation, arrhythmias, and, in very rare instances, device migration. Echocardiography has become a widely used and reliable form of patient imaging that relies on the skillset of the sonographer as well as the interpreting physician. This case study illustrates the specific role of the cardiac sonographer in taking a careful clinical history, imaging of an ASD occluder device, and its location as it migrated into the aortic arch. This case also demonstrates the importance of imaging beyond the standard echocardiographic protocol, given this clinical manifestation.
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