Background Rice ( Oryza sativa L .) is one of the major staple food crops consumed globally. However, rice production is severely affected by high salinity levels, particularly at the seedling stage. A good solution would be the development of an efficient screening methodology to identify genotypes possessing genes for salt tolerance. Result A new salinity tolerance screening technique using rice seedlings in pot-culture was tested. This method controls soil heterogeneity by using pure sand as a growth medium and minimizes unexpected extreme weather conditions with a movable shelter. Seventy-four rice genotypes were screened at three salinity treatments including high salt stress (electrical conductivity (EC) 12 dSm − 1 ), moderate salt stress (EC 6 dSm − 1 ), and control (no salt stress), imposed 1 week after emergence. Several shoot and root morpho-physiological traits were measured at 37 days after sowing. A wide range of variability was observed among genotypes for measured traits with root traits being identified as the best descriptors for tolerance to salt stress conditions. Salt stress response indices (SSRI) were used to classify the 74 rice genotypes; 7 genotypes (9.46%) were identified as salt sensitive, 27 (36.48%) each as low and moderately salt tolerant, and 13 (17.57%) as highly salt tolerant. Genotypes FED 473 and IR85427 were identified as the most salt tolerant and salt sensitive, respectively. These results were further confirmed by principal component analysis (PCA) for accuracy and reliability. Conclusion Although tolerant genotypes still need to be confirmed in field studies and tolerance mechanisms identified at the molecular level, information gained from this study could help rice breeders and other scientists to accelerate breeding by selecting appropriate donor parents, progenies and potential genotypes at early growth stages necessary for salinity tolerance research. Electronic supplementary material The online version of this article (10.1186/s12284-019-0317-7) contains supplementary material, which is available to authorized users.

Rice (Oryza sativa L.) is an essential staple food crop, but the per acre average rice yield is less than its substantial potential in many countries. Rice breeders and growers would benefit from a robust genotypes with better morpho-physiological and yield-related traits. Here, seventy-four new rice genotypes were phenotyped over two years for their gas exchange and yield potential-related traits under Mississippi rice-growing conditions. A wide range of variability was observed among genotypes for all measured traits. Detailed phenotyping of rice genotypes revealed two key relationships that function together to contribute to yield potential under the southern US climate. The first one, grain yield, grain number, and spikelet fertility, showed considerable correlation (r = 0.45 to 0.79, p < 0.001) to harvest index. Conversely, days to anthesis had a high and negative correlation with harvest index (r = −0.79, p < 0.001), which suggests that selection for short duration genotypes with efficient partitioning could improve the yields under southern US climatic conditions. Additive response index revealed a higher positive association with yield traits (R2 = 0.59) than physiological (R2 = 0.28) and morphological traits (R2 = 0.21). Compared with the commercial genotype Rex, 21.6% and 47.3% of the rice genotypes had a higher gas exchange and yield response scores. IR08A172, IR07K142 and IR07F287 were ranked as high performers in physiological and yield response indices. Our study highlights that selection for short-duration yield-related traits with efficient sink capacity traits is desirable for future breeding programs.

Extreme temperatures are considered one of the main constraints that limit the growth and development of rice. We elucidated the root and shoot developmental plasticity of 64 rice genotypes during early seedling establishment, using the sunlit plant growth chambers at 22/14 (low), 30/22 (optimum), and 38/30 °C (high) day/night temperatures. Low temperature severely inhibited 23 traits, such as shoot (68%), root (57%), and physiological (35%) attributes. On the contrary, the high temperature positively affected most of the shoot (48%) and root (31%) traits, except root diameter and root/shoot ratio, compared with the optimum. Alternatively, leaf chlorophyll fluorescence-associated parameters declined under low (34%) and high (8%) temperatures. A weak correlation between cumulative high-temperature response index (CHTRI) and cumulative low-temperature response index (CLTRI) indicates the operation of different low- and high-temperature tolerance mechanisms at the early seedling stage. Groups of distinct rice genotypes associated with low or high-temperature tolerance were selected based on CHTRI and CLTRI. The genotypes that commonly performed well under low and high temperatures (IR65600-81-5-2-3, CT18593-1-7-2-2-5, RU1504114, RU1504122, Bowman, and INIA Tacuari) will be valuable genetic resources for breeders in developing early-season high- and low-temperature-tolerant genotypes for a broad range of both tropical and temperate rice-growing environments.