We develop metrics for measuring the quality of synthetic health data for both education and research. We use novel and existing metrics to capture a synthetic dataset's resemblance, privacy, utility and footprint. Using these metrics, we develop an end-to-end workflow based on our generative adversarial network (GAN) method, HealthGAN, that creates privacy preserving synthetic health data. Our workflow meets privacy specifications of our data partner: (1) the HealthGAN is trained inside a secure environment; (2) the HealthGAN model is used outside of the secure environment by external users to generate synthetic data. This second step facilitates data handling for external users by avoiding de-identification, which may require special user training, be costly, or cause loss of data fidelity. This workflow is compared against five other baseline methods. While maintaining resemblance and utility comparable to other methods, HealthGAN provides the best privacy and footprint. We present two case studies in which our methodology was put to work in the classroom and research settings. We evaluate utility in the classroom through a data analysis challenge given to students and in research by replicating three different medical papers with synthetic data. Data, code, and the challenge that we organized for educational purposes are available.
Counterfactual examples for an input-perturbations that change specific features but not others-have been shown to be useful for evaluating bias of machine learning models, e.g., against specific demographic groups. However, generating counterfactual examples for images is nontrivial due to the underlying causal structure on the various features of an image. To be meaningful, generated perturbations need to satisfy constraints implied by the causal model. We present a method for generating counterfactuals by incorporating a structural causal model (SCM) in an improved variant of Adversarially Learned Inference (ALI), that generates counterfactuals in accordance with the causal relationships between attributes of an image. Based on the generated counterfactuals, we show how to explain a pre-trained machine learning classifier, evaluate its bias, and mitigate the bias using a counterfactual regularizer. On the Morpho-MNIST dataset, our method generates counterfactuals comparable in quality to prior work on SCM-based counterfactuals (DeepSCM), while on the more complex CelebA dataset our method outperforms DeepSCM in generating high-quality valid counterfactuals. Moreover, generated counterfactuals are indistinguishable from reconstructed images in a human evaluation experiment and we subsequently use them to evaluate the fairness of a standard classifier trained on CelebA data. We show that the classifier is biased w.r.t. skin and hair color, and how counterfactual regularization can remove those biases.
We propose a novel bootstrap procedure for dependent data based on Generative Adversarial networks (GANs). We show that the dynamics of common stationary time series processes can be learned by GANs and demonstrate that GANs trained on a single sample path can be used to generate additional samples from the process. We find that temporal convolutional neural networks provide a suitable design for the generator and discriminator, and that convincing samples can be generated on the basis of a vector of iid normal noise. We demonstrate the finite sample properties of GAN sampling and the suggested bootstrap using simulations where we compare the performance to circular block bootstrapping in the case of resampling an AR(1) time series processes. We find that resampling using the GAN can outperform circular block bootstrapping in terms of empirical coverage. * Acknowledgements: The authors gratefully acknowledge support from the Google Tensorflow Research Cloud (TFRC). PyTorch code for this paper is available on request. We also thank Giovanni Mellace and Peter Sandholt Jensen for useful comments.
Influencers are key to the nature and networks of information propagation on social media. Influencers are particularly important in political discourse through their engagement with issues, and may derive their legitimacy either solely or partly through online operation, or have an offline sphere of expertise such as entertainers, journalists etc. To quantify influencers' political engagement and polarity, we use Google's Universal Sentence Encoder (USE) to encode the tweets of 6k influencers and 26k Indian politicians during political crises in India. We then obtain aggregate vector representations of the influencers based on their tweet embeddings, which alongside retweet graphs help compute the stance and polarity of these influencers with respect to the political issues. We find that while on COVID-19 there is a confluence of influencers on the side of the government, on three other contentious issues around citizenship, Kashmir's statehood, and farmers' protests, it is mainly government-aligned fan accounts that amplify the incumbent's positions. We propose that this method offers insight into the political schisms in present-day India, but also offers a means to study influencers and polarization in other contexts.
Generating synthetic data represents an attractive solution for creating open data, enabling health research and education while preserving patient privacy. We reproduce the research outcomes obtained on two previously published studies, which used private health data, using synthetic data generated with a method that we developed, called HealthGAN. We demonstrate the value of our methodology for generating and evaluating the quality and privacy of synthetic health data. The dataset are from OptumLabs R Data Warehouse (OLDW). The OLDW is accessed within a secure environment and doesn't allow exporting of patient level data of any type of data, real or synthetic, therefore the HealthGAN exports a privacy-preserving generator model instead. The studies examine questions related to comorbidites of Autism Spectrum Disorder (ASD) using medical records of children with ASD and matched patients without ASD. HealthGAN generates high quality synthetic data that produce similar results while preserving patient privacy. By creating synthetic versions of these datasets that maintain privacy and achieve a high level of resemblance and utility, we create valuable open health data assets for future research and education efforts.
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