Rock‐Eval pyrolysis provides a quick, relatively inexpensive means of characterizing organic‐rich strata, and has been used for decades to understand global petroleum systems. Although designed to characterize ancient kerogens, pyrolysis is increasingly being used to understand Holocene systems as well. The ability of this technique to distinguish between types of preserved organic matter is useful in characterizing climatic evolution, particularly in systems sensitive to climatic fluctuation such as isolated fens and bogs. Cores collected from the Tokewanna and Garden Basin Cattail fens in central/eastern Utah exhibit variability of organic source, with the mixture of terrestrial and algal sources varying through time, as shown through the hydrogen index (HI) and oxygen index pyrolysis parameters. A sediment core was collected at each fen, and 176 samples were taken from the cores at 6‐cm intervals. Total organic carbon (TOC) for all samples ranges from 1.3 to 44.2%, with an average of 18.2% TOC. Samples range from 84 to 687 HI, equivalent to Type I (lacustrine algal) to Type III (terrestrial) organic material (OM). Variability in HI response represents mixing of the two OM sources, and the relative amount of aqueous organic input can be estimated through time based on age‐calibrated HI curves at the two sites. The balance of organic input serves as an accurate, high‐resolution proxy for climate, and calibration with palynological data near both sites confirms patterns shown by pyrolysis, showing the utility of this method in quickly, affordably and accurately characterizing Holocene sediments for use in understanding palaeoclimate.