A novel filamentous, nonheterocytous cyanobacterium was isolated from Lagos Lagoon, Nigeria. The isolate was <3.0 µm wide, untapered, with small rounded polar bodies (aerotopes or cyanophycin granules) visible at the crosswalls, and consequently fit the morphological description of Limnothrix planctonica. Although morphologically inseparable from that species, it was molecularly distant from that taxon, with genetic identities between the two taxa ranging 90.73-92.49%, a degree of separation typical of different genera. Both taxa, as well as Limnothrix rosea, are phylogenetically in the Prochlorotrichaceae, distant from the type species of Limnothrix, L. redekei, which is in the Pseudanabaenaceae. The isolate is herein described as Lagosinema tenuis gen. et sp. nov.

The impact of environmental variables and processes of nutrient enrichment on phytoplankton community at Epe lagoon was studied for 18 months (November 2012-April 2014. Two cyanobacterial bloom incidences were observed in the two dry seasons during this period. Rainfall pattern regulated nitrogen limitation which triggered cyanobacterial bloom development and influenced the bloom duration. Nutrient-laden influx from agricultural practices accounted for the increase in nitrate, phosphate and the relatively low silicate. Hypoxic conditions during the two bloom episodes reflected the vulnerability of this lagoon ecosystem. The cyanobacterial blooms were dominated by potentially toxic species; Anabaena circinalis, A. flos-aquae, A. limnetica and A. spiroides. A comparison of ambient nutrient ratios with the Redfield ratio (N/P/Si = 16:1:16) showed clear temporal variations that coincided with phytoplankton dynamics and the bloom regime. Low N/P ratios were recorded during the first 8 months, and there was a shift to higher ratios during the subsequent 8 months, followed by low N/P ratios in the last 2 months. Higher silicate values coincided with decreased cyanobacterial biomass, cyanobacteria bloom collapse and proliferation of diatoms during the first annual cycle. Cyanobacterial abundance exceeded the alert level 1 and almost reached alert level 2 which call for continuous environmental monitoring and management of coastal waters.