Alpine areas are well known biodiversity hotspots, but their future may be threatened by expanding forest and changing human land use. Here, we reconstructed past vegetation, climate, and livestock over the past ~ 12,000 years from Lake Sulsseewli (European Alps), based on sedimentary ancient DNA, pollen, spores, chironomids, and microcharcoal. We assembled a highly-complete local DNA reference library (PhyloAlps, 3,923 plant species), and used this to obtain an exceptionally rich sedaDNA record of 366 plant taxa. The vegetation mainly responded to temperature during the first half of the Holocene, while human activity drove changes from 6 ka onwards. Land-use shifted from episodic grazing (Neolithic, Bronze Age) to agropastoral intensification (Medieval Age). This prompted a coexistence of species typically found at different elevational belts, thereby increasing plant richness to levels that characterise present-day alpine diversity. Our results indicate that traditional agropastoral activities should be maintained to prevent reforestation and preserve alpine plant biodiversity.

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In the Quaternary paleosciences, the rationale behind analogical inference presupposes that former natural changes can be explained by causes operating now, although their intensity and rates can vary through time. In this paper we synthesise synthetize the results of different modern analog studies and discuss their value to obtain the best inferences from high resolution past records. This synthesis is based on the following: 1) The monthly monitoring of calcite precipitation reveals a strong connection with primary producers and between-years variability; this precipitation produces a seasonal signal with imprint on varve formation. 2) Clear pollen sedimentation peaks occur in spring/summer and fall/winter that coincide with temperature, precipitation, relative humidity and winds; this pattern converges with the two-layer coupled varves representing the same seasonality. 3) We assess the lake’s contemporary oxygenation dynamics over a three- year period; a combination of sedimentary REDOX proxies revealed different scenarios of oxic/anoxic shifts since 1500 CE. 4) We investigate presence of seasonality in the production/distribution of glycerol dialkyl glycerol tetraethers and derived temperature estimates in soils and particulate matter. Branched glycerol dialkyl glycerol tetraethers signatures and some derived temperature estimates proxies appear to mainly depend on the non-seasonal shifts in soil properties. 5) Currently we examine relationships and similarities between extant phytoplankton and derived pigments in water and traps, and their correspondence with subfossil pigments; some preliminary results are presented here.Keywords: high resolution, endogenic varves, calcite precipitation, pollen sedimentation, meromixis, freshwater glycerol dialkyl tetraether, subfossil pigments, long-term ecology.