Planktonic organisms exhibit diverse morphological, behavioural and life-history responses to the chemical presence of potential predators. Prey organisms have been found to sense such predators via predator-derived kairomones. The induced reactions are assumed to reduce predation risk and thus to be adaptive. Numerous studies have investigated various aspects of inducible defences in different crustaceans, in rotifers, planktonic ciliates and algae. As a first step, we summarise recent work on chemically induced anti-predator defences in morphology, life history and behaviour. Morphological defences have been found in a wide range of different plankton organisms and recent studies on predator-induced morphologies mainly addressed the question of costs for these changes. Life-history responses were mainly studied in cladocerans and several studies have recently addressed some novel topics, such as diapause induction and the influence of predator kairomones on hatching of resting stages. Behavioural anti-predator defences also have been found for several plankton species and are characterised by relatively fast induction times. We further identified four research directions in which substantial progress has been made recently: (I) The effects of simultaneous exposure to infochemicals from different predators and the consequences of a complex chemical environment. Some environmental contaminants, such as synthetic chemicals or heavy metals, have been found to potentially disturb natural chemical communication in aquatic predator-prey systems. (II) The influence of genetic variation on the reaction to infochemicals and its implications. Clonal differences have not only been found for the presence or absence of a certain trait but also with respect to the type of response. (III) The degree to which different types of responses to a specific kairomone are coupled. Recent studies underline the uncoupling of different anti-predator responses of which some have been considered to be coupled. (IV) Studies on the chemical properties and on the metabolic origin of predator kairomones. Substantial progress has been made recently, especially with respect to the identification of predator kairomones that are important for planktonic ciliates. The identification and isolation of kairomones are an important step towards studies addressing the consequences of predator-induced defences on the level of populations, communities and ecosystems. So far most studies have considered effects and consequences on the level of individual prey organisms and studies taking the consequences at higher ecological levels into account are rare.

Adaptation is often thought to affect the likelihood that a virus will be able to successfully emerge in a new host species. If so, surveillance for genetic markers of adaptation could help to predict the risk of disease emergence. However, adaptation is difficult to distinguish conclusively from the other processes that generate genetic change. In this Review we survey the research on the host jumps of influenza A, severe acute respiratory syndrome-coronavirus, canine parvovirus and Venezuelan equine encephalitis virus to illustrate the insights that can arise from combining genetic surveillance with microbiological experimentation in the context of epidemiological data. We argue that using a multidisciplinary approach for surveillance will provide a better understanding of when adaptations are required for host jumps and thus when predictive genetic markers may be present.

Co-infection by multiple parasites is common within individuals. Interactions between co-infecting parasites include resource competition, direct competition and immune-mediated interactions and each are likely to alter the dynamics of single parasites. We posit that co-infection is a driver of variation in parasite establishment and growth, ultimately altering the production of parasite transmission stages. To test this hypothesis, three different treatment groups of laboratory mice were infected with the gastrointestinal helminth Heligmosomoides polygyrus, the respiratory bacterial pathogen Bordetella bronchiseptica lux+ or co-infected with both parasites. To follow co-infection simultaneously, self-bioluminescent bacteria were used to quantify infection in vivo and in real-time, while helminth egg production was monitored in real-time using faecal samples. Co-infection resulted in high bacterial loads early in the infection (within the first 5 days) that could cause host mortality. Co-infection also produced helminth ‘super-shedders’; individuals that chronically shed the helminth eggs in larger than average numbers. Our study shows that co-infection may be one of the underlying mechanisms for the often-observed high variance in parasite load and shedding rates, and should thus be taken into consideration for disease management and control. Further, using self-bioluminescent bacterial reporters allowed quantification of the progression of infection within the whole animal of the same individuals at a fine temporal scale (daily) and significantly reduced the number of animals used (by 85%) compared with experiments that do not use in vivo techniques. Thus, we present bioluminescent imaging as a novel, non-invasive tool offering great potential to be taken forward into other applications of infectious disease ecology.

Seasonal disease dynamics are common in nature, but their causes are often unknown. Our case study provides insight into the cyclic prevalence pattern of the horizontally and vertically transmitted microsporidium Octosporea bayeri in its Daphnia magna host. Data from several populations over a four year period revealed a regular prevalence increase during summer and a decrease over winter when hosts underwent diapause. Prevalence also decreased after summer diapause indicating that the decline is causally linked to diapause rather than to winter conditions. Experiments showed that host diapause itself can explain a certain proportion of the decline. The decline further depends on the environmental conditions during diapause: infected resting eggs suffered from higher mortality under experimental winter than under experimental summer diapause conditions. Investigating the mechanisms of prevalence increase after diapause, the parasite was found to survive winter outside its host, enabling horizontal infection of susceptible hosts in the following growing season. Allowing for horizontal transmission in experimental host populations resulted in a steep prevalence increase, while excluding it led to a pronounced decline. Thus, the apparent seasonality in O. bayeri prevalence is characterized by a decline during host diapause followed by horizontal spread of the parasite during the host's asexual growth phase.