Varietal data from 27 crop species from five continents were drawn together to determine overall trends in crop varietal diversity on farm. Measurements of richness, evenness, and divergence showed that considerable crop genetic diversity continues to be maintained on farm, in the form of traditional crop varieties. Major staples had higher richness and evenness than nonstaples. Variety richness for clonal species was much higher than that of other breeding systems. A close linear relationship between traditional variety richness and evenness (both transformed), empirically derived from data spanning a wide range of crops and countries, was found both at household and community levels. Fitting a neutral “function” to traditional variety diversity relationships, comparable to a species abundance distribution of “neutral ecology,” provided a benchmark to assess the standing diversity on farm. In some cases, high dominance occurred, with much of the variety richness held at low frequencies. This suggested that diversity may be maintained as an insurance to meet future environmental changes or social and economic needs. In other cases, a more even frequency distribution of varieties was found, possibly implying that farmers are selecting varieties to service a diversity of current needs and purposes. Divergence estimates, measured as the proportion of community evenness displayed among farmers, underscore the importance of a large number of small farms adopting distinctly diverse varietal strategies as a major force that maintains crop genetic diversity on farm.

In this paper we attempt to remove the dichotomy created by distinguishing between participatory and non-participatory breeding programmes by using the degree of client orientation as the basis for an analysis. Although all breeding programmes are implicitly client-oriented, we examine how participatory approaches explicitly increase the extent of client orientation. We briefly review the history of participatory plant breeding (PPB) and analyse the participatory techniques used at different stages of the breeding programme. In common with several other authors, we find that farmer involvement in selecting in the segregating generations may not be an essential component of PPB. However, in some circumstances such collaboration is required and is the subject of a second paper in this series. The purpose of all the techniques used in PPB programmes is to better meet the needs of clients. Thus, breeding programmes can be differentiated by their extent of client-orientation removing the dichotomy involved with the term participatory. We discuss four techniques in the suite of techniques that have been employed by PPB: identifying the target market or clients; using germplasm that can best meet the needs of target clients; matching the environments of the target clients; and product testing in the target market with target clients. Most attention is paid to the last of these four that is often referred to as participatory varietal selection (PVS) and how it is done varies with circumstances. Rice varieties from a client-oriented breeding programme in Nepal were tested in mother and baby trials in Bangladesh. The rapid acceptance of these varieties by farmers illustrates the power of the participatory trials system and the success of a highly client-oriented breeding approach.

The fungal pathogen Sclerotinia sclerotiorum causes stem rot of oilseed rape (Brassica napus) worldwide. In preparation for genome-wide association mapping (GWAM) of sclerotinia resistance in B. napus, 152 accessions from diverse geographical regions were screened with a single Canadian isolate, #321. Plants were inoculated by attaching mycelium plugs to the main stem at full flower. Lesion lengths measured 7, 14 and 21 days after inoculation were used to calculate the area under the disease progress curve (AUDPC). Depth of penetration was noted and used to calculate percent soft and collapsed lesions (% s + c). The two disease traits were highly correlated (r = 0.93). Partially resistant accessions (AUDPC <7 and % s + c <2) were identified primarily from South Korea and Japan with a few from Pakistan, China and Europe. Genotyping of accessions with 84 simple sequence repeat markers provided 690 polymorphic loci for GWAM. The general linear model in TASSEL best fitted the data when adjusted for population structure (STRUCTURE), GLM + Q. After correction for positive false discovery rate, 34 loci were significantly associated with both disease traits of which 21 alleles contributed to resistance, while the remaining enhanced susceptibility. The phenotypic variation explained by the loci ranged from 6 to 25 %. Five loci mapped to published quantitative trait loci conferring sclerotinia resistance in Chinese lines.Electronic supplementary materialThe online version of this article (doi:10.1007/s11032-016-0496-5) contains supplementary material, which is available to authorized users.

Helminthosporium leaf blight (HLB), caused by a complex of Cochliobolus sativus (Ito & Kurib.) Drechsler ex Dastur and Pyrenophora tritici-repentis Died, is a serious disease of wheat (Triticum aestivum L.) in the warm lowlands of South Asia. Wheat cultivars grown in the area are either susceptible to HLB or possess low levels of resistance to it. A replicated field study was conducted in 1999 and 2000 at two sites in Nepal to determine the level of HLB resistance and other desirable traits in 60 wheat genotypes of diverse origin. The test genotypes were planted in main strips divided into two strips one of which was sprayed four times with Tilt TM (a.i. propiconazole) @ 125 g of a.i. ha −1 . Four readings of HLB were recorded to calculate the area under the disease progress curve (AUDPC). Other traits under investigation included biomass yield (BY), grain yield (GY), 1000-kernel weight (TKW), harvest index (HI), days to heading (DH) and maturity (DM), plant height (PHT), and effective tiller number (ETN). Wheat genotypes differed significantly for all traits. Mean AUDPC values ranged from 45 to 1268. A few exotic genotypes were highly resistant to HLB. Losses in GY due to HLB ranged from 2 to 26%, and TKW was reduced by up to 33%. A few genotypes showed HLB tolerance, i.e., relatively smaller GY and TKW reductions despite high levels of HLB. In general, medium to late maturity and higher levels of HLB resistance and low to high GY and TKW characterized genotypes exotic to South Asia. Biplot analysis identified several genotypes that were HLB-resistant and agronomically superior. Results suggest it is possible to improve HLB resistance of local wheat cultivars based on selective breeding using this pool of germplasm.

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