Mutation rate and effective population size (Ne) jointly determine intraspecific genetic diversity, but the role of mutation rate is often ignored. Here we investigate genetic diversity, spontaneous mutation rate and Ne in the giant duckweed (Spirodela polyrhiza). Despite its large census population size, whole-genome sequencing of 68 globally sampled individuals reveals extremely low intraspecific genetic diversity. Assessed under natural conditions, the genome-wide spontaneous mutation rate is at least seven times lower than estimates made for other multicellular eukaryotes, whereas Ne is large. These results demonstrate that low genetic diversity can be associated with large-Ne species, where selection can reduce mutation rates to very low levels. This study also highlights that accurate estimates of mutation rate can help to explain seemingly unexpected patterns of genome-wide variation.

One Sentence Summary: The low-down on a tiny plant: extremely low genetic diversity in an 34 aquatic plant is associated with its exceptionally low mutation rate. 35 36 Main Text 37Explaining within-species genetic diversity-measured as the level of intraspecific DNA 38 sequence variation-is a major goal in evolutionary and conservation biology, as this diversity 39 can influence how species cope with changing environments (1, 2). While intraspecific genetic 40 diversity is known to vary widely among species, the underlying causes remain controversial (3, 41 4). According to population genetic theory, the population mutation parameter (q ) is determined 42 by the product of the spontaneous neutral mutation rate (µ) and effective population size (Ne), 43 and in diploid species q = 4 ´ Ne ´ µ (5). In practice, the parameter q is often estimated by the 44 average pairwise nucleotide diversity (p) at putatively neutral sites (6). While the role of Ne in 45 explaining variation in genetic diversity among taxa has received much theoretical and empirical 46 attention (3, 4, 7), the influence of variation in mutation rate and the interaction between Ne and 47

Flavonoids may mediate UV protection in plants either by screening of harmful radiation or by minimizing the resulting oxidative stress. To help distinguish between these alternatives, more precise knowledge of flavonoid distribution is needed. We used confocal laser scanning microscopy (cLSM) with the “emission fingerprinting” feature to study the cellular and subcellular distribution of flavonoid glucosides in the giant duckweed (Spirodela polyrhiza), and investigated the fitness effects of these compounds under natural UV radiation and copper sulphate addition (oxidative stress) using common garden experiments indoors and outdoors. cLSM “emission fingerprinting” allowed us to individually visualize the major dihydroxylated B‐ring‐substituted flavonoids, luteolin 7‐O‐glucoside and luteolin 8‐C‐glucoside, in cross‐sections of the photosynthetic organs. While luteolin 8‐C‐glucoside accumulated mostly in the vacuoles and chloroplasts of mesophyll cells, luteolin 7‐O‐glucoside was predominantly found in the vacuoles of epidermal cells. In congruence with its cellular distribution, the mesophyll‐associated luteolin 8‐C‐glucoside increased plant fitness under copper sulphate addition but not under natural UV light treatment, whereas the epidermis‐associated luteolin 7‐O‐glucoside tended to increase fitness under both stresses across chemically diverse genotypes. Taken together, we demonstrate that individual flavonoid glucosides have distinct cellular and subcellular locations and promote duckweed fitness under different abiotic stresses.

Although non-genetic inheritance is thought to play an important role in plant ecology and evolution, evidence for adaptive transgenerational plasticity is scarce. Here, we investigated the consequences of copper excess on offspring defences and fitness under recurring stress in the duckweed Spirodela polyrhiza across multiple asexual generations . Growing large monoclonal populations (greater than 10 000 individuals) for 30 generations under copper excess had negative fitness effects after short and no fitness effect after prolonged growth under recurring stress. These time-dependent growth rates were likely influenced by environment-induced transgenerational responses, as propagating plants as single descendants for 2 to 10 generations under copper excess had positive, negative or neutral effects on offspring fitness depending on the interval between initial and recurring stress (5 to 15 generations). Fitness benefits under recurring stress were independent of flavonoid accumulations, which in turn were associated with altered plant copper concentrations. Copper excess modified offspring fitness under recurring stress in a genotype-specific manner, and increasing the interval between initial and recurring stress reversed these genotype-specific fitness effects. Taken together, these data demonstrate time- and genotype-dependent adaptive and non-adaptive transgenerational responses under recurring stress, which suggests that non-genetic inheritance alters the evolutionary trajectory of clonal plant lineages in fluctuating environments.

Gut enzymes can metabolize plant defense compounds and thereby affect the growth and fitness of insect herbivores. Whether these enzymes also influence feeding preference is largely unknown. We studied the metabolization of taraxinic acid β-D-glucopyranosyl ester (TA-G), a sesquiterpene lactone of the common dandelion (Taraxacum officinale) that deters its major root herbivore, the common cockchafer larva (Melolontha melolontha). We have demonstrated that TA-G is rapidly deglucosylated and conjugated to glutathione in the insect gut. A broad-spectrum M. melolontha β-glucosidase, Mm_bGlc17, is sufficient and necessary for TA-G deglucosylation. Using cross-species RNA interference, we have shown that Mm_bGlc17 reduces TA-G toxicity. Furthermore, Mm_bGlc17 is required for the preference of M. melolontha larvae for TA-G-deficient plants. Thus, herbivore metabolism modulates both the toxicity and deterrence of a plant defense compound. Our work illustrates the multifaceted roles of insect digestive enzymes as mediators of plant-herbivore interactions.