Because
of the size of light-harvesting complexes and the involvement
of electronic degrees of freedom, computationally these systems need
to be treated with a combined quantum–classical description.
To this end, Born−Oppenheimer molecular dynamics simulations
have been employed in a quantum mechanics/molecular mechanics (QM/MM)
fashion for the ground state followed by excitation energy calculations
again in a QM/MM scheme for the Fenna−Matthews−Olson
(FMO) complex. The self-consistent-charge density functional tight-binding
(DFTB) method electrostatically coupled to a classical description
of the environment was applied to perform the ground-state dynamics.
Subsequently, long-range-corrected time-dependent DFTB calculations
were performed to determine the excitation energy fluctuations of
the individual bacteriochlorophyll a molecules. The
spectral densities obtained using this approach show an excellent
agreement with experimental findings. In addition, the fluctuating
site energies and couplings were used to estimate the exciton transfer
dynamics.
In the present work, we perform a benchmark study on both the isolated chromophores retinal and BChl a as well as on the biological systems, to determine the accuracy of LC-TD-DFT and LC-TD-DFTB for describing color-tuning effects.
Photosynthetic processes are driven by sunlight. Too little of it and the photosynthetic machinery cannot produce the reductive power to drive the anabolic pathways. Too much sunlight and the machinery...
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