No abstract

The study concerns N-methyl-2-pyrrolidinone, N,N-dimethylformamide, 2-pyrrolidinone, N-methylformamide, and formamide in DMSO-d and CDCl solutions. It has been shown that the results of DFT calculations [B3LYP and/or PBE0 6-311++G(2d,p), PCM] of molecular geometries and magnetic shielding are able to reproduce very well the amide H NMR andC NMR chemical shifts measured in these solvents provided that the specific solvation of the solute molecules and their association are taken into account and also that comparison of the experimental and theoretical data is carefully done. Analysis of the chemical shift data points out that in CDCl solutions primary and secondary amides are partially associated and that their carbonyl oxygen lone electron pairs are specifically solvated by solvent molecules. At the same time, association of the amides seems to be of minor importance in DMSO, while their N-H hydrogens form strong hydrogen bonds with solvent molecules.

H NMR and C NMR spectra of uracil, thymine, 5-hydroxymethyluracil, 5,6-dihydrouracil, and 5,6-dihydrothymine in DMSO-d solutions have been measured. Additionally, molecular structures as well as NMR parameters of these compounds and their various solvates have been calculated using DFT B3LYP/6-311++G(2d,p) PCM(DMSO) method. The analysis of the chemical shift data for these compounds has shown that, indeed, in DMSO solutions they occur as equilibrium mixtures of free molecules and solvates in which solute and solvent molecules are joined by NH···O or OH···O hydrogen bonds. The populations of particular species present in the solutions have been estimated. Moreover, it has been found that 5,6-dihydrothymine exists in DMSO solution preferentially in conformation with the methyl group occupying the pseudoequatorial position. This finding is based on the molecular energy calculations and remains in full agreement with the interpretation of NMR data and theoretical calculations of NMR parameters.

1H and 13C NMR spectra of 2-acyl-substituted cyclohexane-1,3-diones (acyl = formyl, 1; 2-nitrobenzoyl, 2; 2-nitro-4-trifluoromethylbenzoyl, 3) and lithium sodium and potassium salts of 1 have been measured. The compound 3, known as NTBC, is a life-saving medicine applied in tyrosinemia type I. The optimum molecular structures of the investigated objects in solutions have been found using the DFT method with B3LYP functional and 6-31G** and/or 6-311G(2d,p) basis set. The theoretical values of the NMR parameters of the investigated compounds have been calculated using GIAO DFT B3LYP/6-311G(2d,p) method. The theoretical data obtained for compounds 1-3 have been exploited to interpret their experimental NMR spectra in terms of the equilibrium between different tautomers. It has been found that for these triketones an endo-tautomer prevails. The differences in NMR spectra of the salts of 1 can be rationalized taking into account the size of the cation and the degree of salt dissociation. It seems that in DMSO solution the lithium salt exists mainly as an ion pair stabilized by the chelation of a lithium cation with two oxygen atoms. The activation free energy the of formyl group rotation for this salt has been estimated to be 51.5 kJ/mol. The obtained results suggest that in all the investigated objects, including the free enolate ions, all atoms directly bonded to the carbonyl carbons lie near the same plane. Some observations concerning the chemical shift changes could indicate strong solvation of the anion of 1 by water molecules. Implications of the results obtained in this work for the inhibition mechanism of (4-hydroxyphenyl) pyruvate dioxygenase by NTBC are commented upon.

In this paper, we continue the exploration of possibilities, limitations, and methodological problems of the studies based on measurements of the nuclear spin relaxation rates running via the scalar relaxation of the second kind (SC2) mechanism. The attention has been focused on the (13)C-(79)Br and (13)C-(81)Br systems in organic bromo compounds, which are characterized by exceptionally small differences of Larmor frequencies, ΔωCBr, of the coupled nuclei. This unique property enables experimental observation of longitudinal SC2 relaxation of (13)C nuclei, which makes investigation of the SC2 relaxation rates an attractive experimental method of determination of spin-spin coupling constants and relaxation rates of quadrupole bromine nuclei, both types of parameters being hardly accessible by direct measurements. A careful examination of the methodology used in SC2 relaxation studies of carbon-bromine systems reveals, however, some disturbing facts that could burden the results with systematic inaccuracies. Namely, the way of calculating the Larmor frequency differences between (13)C and bromine isotopes, ΔωCBr, may cause some reservations. In this work, the values of (79)Br and (81)Br magnetogyric ratios have been rechecked using bromine NMR data for the KBr·Kryptofix 222 complex in acetonitrile solution and the results of the advanced calculations of the magnetic shielding of the bromine nucleus in the Br(-) anion. Moreover, it has been pointed out that in the case of (13)C-(79)Br, the magnetic shielding of the bromine nucleus in the investigated molecule must not be neglected during the calculation of the ΔωCBr parameter. Some recommendations concerning the exploitation of available theoretical methods to calculate bromine shielding constants for bromo compounds have also been formulated, keeping in mind relativistic effects.