Uronates are charged sugars that form the basis of two abundant sources of biomass-pectin and alginate-found in the cell walls of terrestrial plants and marine algae, respectively. These polysaccharides represent an important source of carbon to those organisms with the machinery to degrade them. The microbial pathways of pectin and alginate metabolism are well studied and essentially parallel; in both cases, unsaturated monouronates are produced and processed into the key metabolite 2-keto-3-deoxygluconate (KDG). The enzymes required to catalyze each step have been identified within pectinolytic and alginolytic microbes; yet the function of a small ORF, kdgF, which cooccurs with the genes for these enzymes, is unknown. Here we show that KdgF catalyzes the conversion of pectin-and alginate-derived 4,5-unsaturated monouronates to linear ketonized forms, a step in uronate metabolism that was previously thought to occur spontaneously. Using enzyme assays, NMR, mutagenesis, and deletion of kdgF, we show that KdgF proteins from both pectinolytic and alginolytic bacteria catalyze the ketonization of unsaturated monouronates and contribute to efficient production of KDG. We also report the X-ray crystal structures of two KdgF proteins and propose a mechanism for catalysis. The discovery of the function of KdgF fills a 50-y-old gap in the knowledge of uronate metabolism. Our findings have implications not only for the understanding of an important metabolic pathway, but also the role of pectinolysis in plant-pathogen virulence and the growing interest in the use of pectin and alginate as feedstocks for biofuel production.uronate | ring opening | tautomerization | pectin | alginate P olysaccharides, such as those found as biomass in marine algae and terrestrial plants, comprise a vast sink of photosynthetically fixed carbon and a potentially enormous source of energy to organisms with the appropriate metabolic systems to unlock it. Pectin, a complex polyuronate largely made up of the uronate D-galacturonate connected by α-(1,4) linkages, is one such polysaccharide. The principal reservoir of pectin is the primary cell wall of terrestrial plants and, as such, its degradation and metabolism by microbes is an important component of the natural turnover of biomass, infection by plant pathogens, digestion of dietary fiber in the mammalian gut, and the utilization of biomass as feedstocks for biofuels or other valuable products (1). Similarly, alginate, another polyuronate that comprises β-linked D-mannuronate and L-guluronate (in varying lengths and arrangements), is a major cell wall component of brown macroalgae (seaweed). Alginate can comprise up to 40% of the dry weight of the algae, making the recycling of this photosynthetically fixed carbon a significant aspect of the ocean carbon cycle. The prevalence of both polysaccharides in biomass has made them important considerations in the production of ethanol from marine algae and terrestrial plant feedstocks (e.g., refs. 2-4).The microbial pathways responsible for the metab...
scite is a Brooklyn-based organization that helps researchers better discover and understand research articles through Smart Citations–citations that display the context of the citation and describe whether the article provides supporting or contrasting evidence. scite is used by students and researchers from around the world and is funded in part by the National Science Foundation and the National Institute on Drug Abuse of the National Institutes of Health.
customersupport@researchsolutions.com
10624 S. Eastern Ave., Ste. A-614
Henderson, NV 89052, USA
This site is protected by reCAPTCHA and the Google Privacy Policy and Terms of Service apply.
Copyright © 2025 scite LLC. All rights reserved.
Made with 💙 for researchers
Part of the Research Solutions Family.