Gram-negative bacteria such as Escherichia coli (E. coli) are assumed to be among the main agents that cause severe mastitis disease with clinical signs in dairy cattle. Rapid detection of this disease is so important in order to prevent transmission to other cows and helps to reduce inappropriate use of antibiotics. With the rapid progress in high-throughput technologies, and accumulation of various kinds of ‘-omics’ data in public repositories, there is an opportunity to retrieve, integrate, and reanalyze these resources to improve the diagnosis and treatment of different diseases and to provide mechanistic insights into host resistance in an efficient way. Meta-analysis is a relatively inexpensive option with good potential to increase the statistical power and generalizability of single-study analysis. In the current meta-analysis research, six microarray-based studies that investigate the transcriptome profile of mammary gland tissue after induced mastitis by E. coli infection were used. This meta-analysis not only reinforced the findings in individual studies, but also several novel terms including responses to hypoxia, response to drug, anti-apoptosis and positive regulation of transcription from RNA polymerase II promoter enriched by up-regulated genes. Finally, in order to identify the small sets of genes that are sufficiently informative in E. coli mastitis, the differentially expressed gene introduced by meta-analysis were prioritized by using ten different attribute weighting algorithms. Twelve meta-genes were detected by the majority of attribute weighting algorithms (with weight above 0.7) as most informative genes including CXCL8 (IL8), NFKBIZ, HP, ZC3H12A, PDE4B, CASP4, CXCL2, CCL20, GRO1(CXCL1), CFB, S100A9, and S100A8. Interestingly, the results have been demonstrated that all of these genes are the key genes in the immune response, inflammation or mastitis. The Decision tree models efficiently discovered the best combination of the meta-genes as bio-signature and confirmed that some of the top-ranked genes -ZC3H12A, CXCL2, GRO, CFB- as biomarkers for E. coli mastitis (with the accuracy 83% in average). This research properly indicated that by combination of two novel data mining tools, meta-analysis and machine learning, increased power to detect most informative genes that can help to improve the diagnosis and treatment strategies for E. coli associated with mastitis in cattle.

This study was conducted with broilers to evaluate the effects of growth-promoting antibiotic (flavomycin) and probiotic (7 bacterial species) supplementation in diets containing soybean oil or free fatty acids (FFA) on performance, morphological parameters of the small intestine, apparent digestibility of gross energy (GE) in the ileum, and apparent digestibility of fat in the ileum and total intestinal tract. Eight-hundred and sixty 4-d-old Ross 308 broiler chicks were used in a 3 × 3 factorial arrangement of dietary treatments that comprised 3 additives (without additive, flavomycin, and probiotic) and 3 fat sources (without fat, 30 g/kg of FFA, and 30 g/kg of soybean oil) with 4 pen replicates per treatment. All diets contained chromic oxide (3 g/kg) as an indigestible marker. Body weight and feed intake were recorded weekly over 40 d. Flavomycin interacted positively with soybean oil and FFA causing improvements (P < 0.05) in BW gain. Among the different fat sources, soybean oil significantly increased (P < 0.05) BW gain and jejunal villi height, whereas flavomycin improved (P < 0.05) BW gain and feed conversion when compared with the remaining dietary additives. However, the probiotic negatively affected (P < 0.05) BW gain and feed conversion despite increased (P < 0.05) villi heights of the duodenum, jejunum, and ileum. At 21 and 38 d of age, fat and GE digestibility were higher (P < 0.05) in the ileum and total intestinal tract of birds fed diets containing soybean oil than those of birds fed FFA. Fat and GE digestibility were highest (P < 0.05) among birds fed flavomycin but lowest (P < 0.05) among probiotic-fed birds. Flavomycin addition to soybean oil or FFA diets significantly increased (P < 0.05) fat and GE digestibility when compared with the same diets containing the probiotic. Therefore, soybean oil is a better energy source than FFA, as indicated by increased growth, nutrient digestibility, and jejunal villi height. However, probiotic supplementation to fat-rich diets caused detrimental effects on nutrient digestibility and growth.

This study aimed to evaluate the effects of dietary different antioxidants and plant oils on performance, apparent metabolizable energy and protein digestibility, meat quality and meat fatty acid composition of broiler chickens. In all, 480 male broiler chicks of 1‐day old were assigned in a completely randomized design with factorial arrangement 2 × 5 (plant oil sources [soybean and rapeseed oils] and antioxidant sources [vitamin E, Thyme, Rosemary and Satureja essential oils] furthermore control treatment without antioxidant). The results indicated that at 1–42 d of age, growth performance and carcass yield of birds were not influenced by dietary plant oils and antioxidant supplementations. Dietary Thyme essential oil (300 mg/kg) resulted in an increase in crude protein digestibility and birds fed on diets without antioxidant showed increase in the apparent metabolizable energy (p < .01). Birds receiving the combination of soybean oil with Rosemary essential oil had lowest malondialdehyde concentration in comparison to birds receiving other treatments (p < .05) in the drumstick meat. Also, birds receiving the combination of soybean oil with vitamin E had lowest malondialdehyde concentration in comparison to birds receiving other treatments (p < .05) in the breast meat. The results indicated that treatments did not influence water holding capacity of meat. Also, dietary rapeseed oil and Thyme essential oil supplementations, separately, decreased saturated fatty acid (p < .01) and increased unsaturated fatty acid and unsaturated to saturated fatty acids ratio (p < .01) of drumstick meat tissue in broiler chicken (p < .01). In conclusion, dietary rapeseed oil and Thyme essential oil increased in n‐3 polyunsaturated fatty acids in the drumstick meat (p < .01) and a combination of dietary soybean oil, Rosemary essential oil and vitamin E decreased the lipid oxidation in the meat of broiler chickens (p < .05).

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