The results of this investigation show that Azerbaijan industries and agricultural sector provide considerable anthropogenic impact on the environment of Caucasus. The use of moss biomonitoring technique and neutron activation analysis (NAA) is a first attempt to study heavy metal atmospheric deposition in Azerbaijan, a country different relief and climate. The study was undertaken in the summer of 2015 of atmospheric deposition of man-made heavy metal pollutants in the area of mining and processing plant in Gadabay and Dashkasan mininig district. At the same time samples were collected from the Goygol State Reserve in the Lesser Caucasus not far from the city of Ganja. A total 85 moss samples (predominantly Pleurozium schreberi) collected in both environmentally contrast area. Elemental determination was carried out by epithermal neutron activation analysis (ENAA) at the reactor IBR-2 of Joint Institute for Nuclear Research (FLNP JINR). For the first time 44 elemental concentrations were determined (Na, Mg, Al, Si, Cl, K, Ca, Sc, Ti, V, Cr, Mn, Fe, Co, Ni, Cu, Zn, As, Se, Br, Rb, Sr, Mo, Ag, Cd, In, Sb, I, Cs, Ba, La, Ce, Nd, Sm, Eu, Tb, Tm, Yb, Hf, Ta, W, Au, Th, U). Multivariate statistical analysis of the analytical results obtained will make it possible to identify the main sources of pollution and to assess the role of long-range transport of pollutants.