Summary Because of the steadily increasing and already manually unmanageable total number of biomarker-related articles in biomedical research, there is a need for intelligent systems that extract all relevant information from biomedical texts and provide it as structured information to researchers in a user-friendly way. To address this, BIONDA was implemented as a free text mining-based online database for molecular biomarkers including genes, proteins and miRNAs and for all kinds of diseases. The contained structured information on published biomarkers is extracted automatically from Europe PMC publication abstracts and high-quality sources like UniProt and Disease Ontology. This allows frequent content updates. Availability and Implementation BIONDA is freely accessible via a user-friendly web application at http://bionda.mpc.ruhr-uni-bochum.de. The current BIONDA code is available at GitHub via https://github.com/mpc-bioinformatics/bionda. Supplementary information Supplementary data are available at Bioinformatics Advances online.

Numerical simulation of the response of healthy and pathological arteries to cardiovascular agents can provide valuable information to the physician in the treatment of diseases such as hypertension, atherosclerosis, and the Marfan syndrome. Here, we provide a first step towards a computational framework to model the effects of antihypertensive agents on the mechanical response of arterial walls. A material model is developed by extending an existing formulation for wall tissue to incorporate the effects of calcium‐ion channel blockers. The resulting coupled deformation‐diffusion problem is then solved using the finite element method. Simulation results with drug activity show that, indeed, an increased lumen diameter due to reduced contraction is obtained. Additionally, a decrease in the rate of arterial contraction is observed, which is also consistent with expected behavior. Finally, we compare results for an implicit or explicit treatment of the the deformation‐diffusion coupling, and we observe that both coupling schemes yield comparable results for a wide range of time step sizes.