The granulosa cell (GC) is the basic functional unit of follicles, and it is important for promoting follicle growth and sex hormones, as well as growth factor secretion in the process of reproduction. A variety of factors influence granulocyte proliferation, yet there are still many gaps to be filled in target and non-coding RNA regulation. In our study, the differentially expressed (DE) mRNAs and miRNAs were detected by using RNA-seq, and we constructed a mRNA–miRNA network related to goat prolificacy. Then, the goat primary GCs were isolated from the follicle for the function validation of candidate genes and their regulator miRNAs. A total of 2,968 DE mRNAs and 99 DE miRNAs were identified in the high- and low-prolificacy goat by RNA-seq, of which there were 1,553 upregulated and 1,415 downregulated mRNAs, and 80 upregulated and 19 downregulated miRNAs, respectively. JAK3 was identified as highly expressed in the low-prolificacy goats (3 times higher than high-prolificacy goats), and the integrated analysis showed that chi-miR-493-3p was a potential regulator of JAK3. The analysis of Kyoto Encyclopedia of Genes and Genomes (KEGG) showed that JAK3 was involved in the PI3K-Akt signaling pathway, the Jak-STAT signaling pathway, and signaling pathways regulating pluripotency of stem cells. In particular, the PI3K-Akt signaling pathway was a typical pathway for cell proliferation, differentiation, apoptosis, and migration. We found that the chi-miR-493-3p targets JAK3 directly via RT-qPCR, dual fluorescence assays, and Western blot. Furthermore, the expression of JAK3 was significantly decreased by the chi-miR-493-3p mimic and increased by the chi-miR-493-3p inhibitor. The CCK-8 assay showed that overexpression of JAK3 promoted cell proliferation, while inhibiting JAK3 had the opposite effect. The expression of cell proliferation markers CDK4 and cyclin D2 also showed the same results. Moreover, the enzyme-linked immunosorbent assay showed that steroid hormones E2 and PROG were increased by overexpressing JAK3 and decreased by inhibiting JAK3. Therefore, our results identified a chi-miR-439-3p-JAK3 regulatory pathway, which provided a new insight into the GC proliferation and prolificacy of goat.
As an important halophyte in the Yellow River Delta, the Amaranthaceae C3 Suaeda salsa (L.) Pall. has attracted much attention for the “red carpet” landscape, and could be simply divided into red and green phenotypes according to the betacyanin content in the fleshy leaves. However, S. salsa has not been sequenced yet, which limited people’s understanding at the molecular level. We adopted PacBio-SMRT, Illumina HiSeq paired-end and Hi-C technique to provide a chromosome-level genome of S. salsa (2n = 2x = 18 chromosomes), and the size of this high-quality genome assembly was 445.10 Mb with scaffold N50 of 47.37 Mb. The assembled genome was reported to have 19,580 genes, of which 99.52% were functionally annotated. Genome annotation showed 67.12% as the repetitive sequences, with long terminal repeats (LTR) being the richest (50.74%). Comparative genomics indicated that S. salsa undergone a WGD event about 146.15 million years ago (Mya), and the estimated divergence time between S. salsa and S. aralocaspica was about 16.9 Mya. A total of four betacyanins including betanidin, celosianin II, amaranthin and 6’-O-malonyl-celosianin II were identified and purified in both phenotypes, while two significantly up-regulated betacyanins (celosianin II and amaranthin) may be the main reason for the red color in red phenotype. In addition, we also performed transcriptomics and metabolomics in both phenotypes to explore the molecular mechanisms of pigment synthesis, and a series of structural genes and transcription factors concerned with betacyanin production were selected in S. salsa.
No abstract
Connected sensors, e.g., cameras, LiDARs, air sensors, installed in a mobile platform (e.g., a terrestrial or aerial vehicle, or special in-person devices) can provide broad views of wide-area environments quickly and efficiently. If many vehicles incorporate such sensing systems, they together can be composed into a unique crowd-sourced platform and can gather fine-grained, diverse, and noisy information at city-scales. However, these sensors can generate large amounts of data and such data is hard to aggregate in a central server. We explore the design of a "roaming edge" - the notion that generalpurpose computing be installed in these mobile platforms, which connect over wireless paths to the static infrastructure and to the static edge nodes, to support a broad range of applications. In particular, a roaming edge node allows different sensors and data sources in-range of a mobile platform to connect to it, and supports data processing for necessary local analytics, considering both efficiency and privacy. The roaming edge, of course, does not operate in isolation and we describe a three-tier architecture that integrates it with a static edge and cloudhosted services. This paper also outlines several applications that can leverage opportunities provided by the roaming edge, and focus, briefly, on one - a real-time video query application with public safety implications.
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