The pursuit of methods for design and preparation of robust nanoarchitectonic systems with integrated functionality through bottom-up methodologies remains a driving force in molecular nanotechnology. Through the use of π-conjugated covalent bonds, we demonstrate a general substrate-mediated, soft solution methodology for the preparation of extended π-conjugated polymeric nanoarchitectures in low-dimensions. Based on thermodynamic control over equilibrium polymerization at the solid-liquid interface whereby aromatic building blocks spontaneously and selectively link, close-packed arrays composed of one-dimensional (1-D) aromatic polymers and two-dimensional (2-D) macromolecular frameworks have been prepared and characterized by in situ scanning tunneling microscopy. This methodology eliminates the necessity for severe conditions and sophisticated equipment common to most current fabrication techniques and imparts almost infinite possibilities for the preparation of robust materials with designer molecular architectures.

Fabrication of controlled peptide nanofibers with homogeneous morphology has been demonstrated. Amphiphilic beta-sheet peptides were designed as sequences of Pro-Lys-X(1)-Lys-X(2)-X(2)-Glu-X(1)-Glu-Pro. X(1) and X(2) were hydrophobic residues selected from Phe, Ile, Val, or Tyr. The peptide FI (X(1)=Phe; X(2)=Ile) self-assemble into straight fibers with 80-120 nm widths and clear edges, as examined by transmission electron microscopy (TEM) and atomic force microscopy (AFM). The fiber formation is performed in a hierarchical manner: beta-sheet peptides form a protofibril, the protofibrils assemble side-by-side to form a ribbon, and the ribbons then coil in a left-handed fashion to make up a straight fiber. These type of fibers are formed from peptides possessing hydrophobic aromatic Phe residue(s). Furthermore, a peptide with Ala residues at both N and C termini does not form fibers (100 nm scale) with clear edges; this causes random aggregation of small pieces of fibers instead. Thus, the combination of unique amphiphilic sequences and terminal Pro residues determine the fiber morphology.

Conductive tubes: Self-assembled nanotubes of a bacteriochlorophyll derivative are reminiscent of natural chlorosomal light-harvesting assemblies. After deposition on a substrate that consists of a non-conductive silicon oxide surface (see picture, brown) and contacting the chlorin nanowires to a conductive polymer (yellow), they show exceptional charge-transport properties.

Perylene 3,4:9,10-tetracarboxylic acid bisimide (PBI) was functionalized with ditopic cyanuric acid to organize it into complex columnar architectures through the formation of hydrogen-bonded supermacrocycles (rosette) by complexing with ditopic melamines possessing solubilizing alkoxyphenyl substituents. The aggregation study in solution using UV-vis and NMR spectroscopies showed the formation of extended aggregates through hydrogen-bonding and π-π stacking interactions. The cylindrical fibrillar nanostructures were visualized by microscopic techniques (AFM, TEM), and the formation of lyotropic mesophase was confirmed by polarized optical microscopy and SEM. X-ray diffraction study revealed that a well-defined hexagonal columnar (Col(h)) structure was formed by solution-casting of fibrillar assemblies. All of these results are consistent with the formation of hydrogen-bonded PBI rosettes that spontaneously organize into the Col(h) structure. Upon heating the Col(h) structure in the bulk state, a structural transition to a highly ordered lamellar (Lam) structure was observed by variable-temperature X-ray diffraction, differential scanning calorimetry, and AFM studies. IR study showed that the rearrangement of the hydrogen-bonding motifs occurs during the structural transition. These results suggest that such a striking structural transition is aided by the reorganization in the lowest level of self-organization, i.e., the rearrangement of hydrogen-bonded motifs from rosette to linear tape. A remarkable increase in the transient photoconductivity was observed by the flash-photolysis time-resolved microwave conductivity (FP-TRMC) measurements upon converting the Col(h) structure to the Lam structure. Transient absorption spectroscopy revealed that electron transfer from electron-donating alkoxyphenyl groups of melamine components to electron-deficient PBI moieties takes place, resulting in a higher probability of charge carrier generation in the Lam structure compared to the Col(h) structure.

Self-assembled structures of melamine and the condensed melamine derivative melem were investigated at aqueous solution-Au(111) interfaces by cyclic voltammetry and in situ scanning tunneling microscopy (STM) observation. The adsorption/desorption behaviors of both molecules on Au(111) surfaces could be controlled by varying the electrochemical potential and solution concentration. In the negative potential region, self-assembled structures of melem and melamine were constructed by double hydrogen bonding systems between nitrogen atoms of triazine rings and amine groups. In addition, melem formed a closely packed structure at potentials of between -0.3 and -0.15 V or in solutions at higher concentrations.