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Motion Planning under uncertainty is critical for safe self-driving. In this paper, we propose a unified obstacle avoidance framework that deals with 1) uncertainty in egovehicle motion; and 2) prediction uncertainty of dynamic obstacles from environment. A two-stage traffic participant trajectory predictor comprising short-term and long-term prediction is used in the planning layer to generate safe but not over-conservative trajectories for the ego vehicle. The prediction module cooperates well with existing planning approaches. Our work showcases its effectiveness in a Frenet frame planner. A robust controller using tube MPC guarantees safe execution of the trajectory in the presence of state noise and dynamic model uncertainty. A Gaussian process regression model is used for online identification of the uncertainty's bound. We demonstrate effectiveness, safety, and real-time performance of our framework in the CARLA simulator.