Strong human-mediated selection via herbicide application in agroecosystems has repeatedly led to the evolution of resistance in weedy plants. Although resistance can occur among separate populations of a species across the landscape, the spatial scale of resistance in many weeds is often left unexamined. We assessed the potential that resistance to the herbicide glyphosate in the agricultural weed Ipomoea purpurea has evolved independently multiple times across its North American range. We examined both adaptive and neutral genetic variations in 44 populations of I. purpurea by pairing a replicated dose–response greenhouse experiment with SSR genotyping of experimental individuals. We uncovered a mosaic pattern of resistance across the landscape, with some populations exhibiting high-survival postherbicide and other populations showing high death. SSR genotyping revealed little evidence of isolation by distance and very little neutral genetic structure associated with geography. An approximate Bayesian computation (ABC) analysis uncovered evidence for migration and admixture among populations before the widespread use of glyphosate rather than the very recent contemporary gene flow. The pattern of adaptive and neutral genetic variations indicates that resistance in this mixed-mating weed species appears to have evolved in independent hotspots rather than through transmission of resistance alleles across the landscape.

Summary 1.Small and low-density populations often suffer significant reductions in reproduction, as exemplified by studies on rare and threatened species. While this phenomenon is less studied in common species, if general, it should not be restricted to those in peril. We addressed this assertion by examining the effects of plant abundance, measured at population-level (population size, density) and local-level (local neighbourhood size, LNS) spatial scales, on fruit set, seed set and subsequent reproductive success (RS) across 19 natural populations of the widespread biennial Sabatia angularis (Gentianaceae). We also examined stigmatic pollen loads across a subset of populations to address whether changes in reproduction were related to reduced pollination. 2. Effects of plant abundance on reproduction were evident at both spatial scales. At the population level, population size -but not density -affected fruit set significantly. This effect was non-linear. Fruit set in populations larger than 15 individuals was relatively constant, but dropped abruptly in populations below that size. This relationship did not prevail between population size and RS. Instead, RS declined significantly with population density. 3. At the local level, increases in LNS between 1-m and 4-m radii from study plants increased fruit set significantly. In contrast, increases within 1 m significantly reduced seed set. Both of these effects prevailed at different spatial scales for RS; increases in 1-m LNS reduced RS, but increases beyond that distance and within 4 m increased RS. 4. Although non-significant, trends in the data are consistent with facilitative interactions for pollination influencing local-level effects on fruit set. However, negative interactions, presumably because of competition for resources, are more important for determining seed set at local scales. Both interactions influence RS, but the effect of competition appears to dominate at the population level. 5. Synthesis . This study demonstrates that although significant reductions in fruit set in small S. angularis populations imply that common species are not impervious to reproductive disadvantages, small populations need not experience reduced RS. Furthermore, low-density populations actually enjoy increased RS. As such, this study highlights the complexity of ecological interactions affecting reproduction and the importance of incorporating multiple spatial scales when examining population dynamics.

Plant transcription factors often contain domains that evolve very rapidly. Although it has been suggested that this rapid evolution may contribute substantially to phenotypic differentiation among species, this suggestion has seldom been tested explicitly. We tested the validity of this hypothesis by examining the rapidly evolving non-DNA-binding region of an R2R3-myb transcription factor that regulates anthocyanin expression in flowers of the genus Ipomoea. We first provide evidence that the W locus in Ipomoea purpurea, which determines whether flowers will be pigmented or white, corresponds to a myb gene segregating in southeastern U.S. populations for one functional allele and one nonfunctional allele. While the binding domain exhibits substantial selective constraint, the nonbinding region evolves at an average K a /K s ratio of 0.74. This elevated rate of evolution is due to relaxed constraint rather than to increased levels of positive selection. Despite this relaxed constraint, however, ‫%52-02ف‬ of the codons, randomly distributed throughout the nonbinding region, are highly constrained, with the remainder evolving neutrally, indicating that the entire region performs important function(s). Our results provide little indication that rapid evolution in this regulatory gene is driven by natural selection or that it is responsible for floral-color differences among Ipomoea species.

The repeated evolution of herbicide resistance has been cited as an example of genetic parallelism, wherein separate species or genetic lineages utilize the same genetic solution in response to selection. However, most studies that investigate the genetic basis of herbicide resistance examine the potential for changes in the protein targeted by the herbicide rather than considering genome-wide changes. We used a population genomics screen and targeted exome re-sequencing to uncover the potential genetic basis of glyphosate resistance in the common morning glory, Ipomoea purpurea, and to determine if genetic parallelism underlies the repeated evolution of resistance across replicate resistant populations. We found no evidence for changes in 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS), glyphosate's target protein, that were associated with resistance, and instead identified five genomic regions that showed evidence of selection. Within these regions, genes involved in herbicide detoxification-cytochrome P450s, ABC transporters, and glycosyltransferasesare enriched and exhibit signs of selective sweeps. One region under selection shows parallel changes across all assayed resistant populations whereas other regions exhibit signs of divergence. Thus, while it appears that the physiological mechanism of resistance in this species is likely the same among resistant populations, we find patterns of both similar and divergent selection across separate resistant populations at particular loci.

One of the major evolutionary trends in flowering plants is the evolution of unisexual flowers (male or female) from perfect flowers. This transition has occurred repeatedly in many taxa and has generated a wonderful array of variation in sexual expression among species. Theoretical studies have proposed a number of mechanisms to explain how this level of variation could be maintained in natural systems. One possible mechanism is the female compensation hypothesis, which predicts that female mutants require an increase in their seed fitness in order to invade a hermaphroditic system. Using Geranium maculatum, I tested this hypothesis and showed that female mothers produced more and larger seeds than hermaphroditic mothers even though they were indistinguishable in their vegetative traits and the flower production. Seeds from females were also more likely to germinate and produced seedlings with larger above- and belowground biomass. These seedlings were more likely to flower than those from hermaphrodites in at least one of the two populations studied. Combined, these results indicated that females in G. maculatum did compensate for their loss of male function by producing more and better seeds than hermaphrodites. This provides a mechanism for the maintenance of female plants in this species.