Chinese loess-palaeosol sequences are well known for their records of monsoonal climatic variations. However, the modern processes of dust accumulation and soil formation remain poorly understood. A high-resolution investigation on modern soils, including the measurement of magnetic susceptibility, particle-size distribution, total Fe, total organic carbon, CaCO 3 content, and optical stimulated luminescence (OSL) dating was carried out on the Zhouyuan loess tableland in the southern Loess Plateau. The results indicate that modern cinnamon soils (luvisols) have developed on contemporarily accumulated aeolian dust during the Holocene. The aeolian loess accumulated during the Younger Dryas was identified in the top part of the Malan Loess that underlay the modern soil by OSL dating and proxy climatic data. It indicates that the Malan Loess accumulated during the last glaciation (marine isotope stages 2-4) does not serve as the parent material for the modern soils. Pedogenesis of the soils started with the increased precipitation and soil moisture that have occurred on the loess tableland since the early Holocene. Precipitation-driven pedogenesis and organic activities are responsible for the leaching of CaCO 3 , decomposition of mineral dust and the production of clay and ferromagnetic minerals. Drier intervals have interrupted soil formation several times, and therefore profiles with multiple soils have been developed at many sites on the loess tableland. At places where soil erosion was relatively strong, either a single soil or welded soils are preserved in the Holocene profiles. This does not necessarily mean, however, that modern soils over the plateau have been developed without interruption under a constantly warmer, moister climate. This is significant for understanding the surface processes and climatic variation during the formation of the numerous palaeosols over the Loess Plateau in the Quaternary.

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Genome organization is driven by forces affecting transcriptional state, but the relationship between transcription and genome architecture remains unclear. Here, we identified the Drosophila transcription factor Motif 1 Binding Protein (M1BP) in physical association with the gypsy chromatin insulator core complex, including the universal insulator protein CP190. M1BP is required for enhancer-blocking and barrier activities of the gypsy insulator as well as its proper nuclear localization. Genome-wide, M1BP specifically colocalizes with CP190 at Motif 1-containing promoters, which are enriched at topologically associating domain (TAD) borders. M1BP facilitates CP190 chromatin binding at many shared sites and vice versa. Both factors promote Motif 1-dependent gene expression and transcription near TAD borders genome-wide. Finally, loss of M1BP reduces chromatin accessibility and increases both inter- and intra-TAD local genome compaction. Our results reveal physical and functional interaction between CP190 and M1BP to activate transcription at TAD borders and mediate chromatin insulator-dependent genome organization.

BackgroundMicroRNAs (miRNAs) play important roles in regulating the expression of protein-coding genes by directing the degradation and/or repression of the translation of gene transcripts. Growing evidence shows that miRNAs are indispensable player in organismal development with its regulatory role in the growth and differentiation of cell lineages. However, the roles of miRNA-mediated regulation in environmental adaptation of organisms are largely unknown. To examine this potential regulatory capability, we characterized microRNAomes from the brain of zebrafish raised under normal (28°C) and cold-acclimated (10°C, 10 days) conditions using Solexa sequencing. We then examined the expression pattern of the protein-coding genes under these two conditions with Affymetrix Zebrafish Genome Array profiling. The potential roles of the microRNAome in the transcriptomic cold regulation in the zebrafish brain were investigated by various statistical analyses.ResultsAmong the total 214 unique, mature zebrafish miRNAs deposited on the miRBase website (release 16), 175 were recovered in this study. In addition, we identified 399 novel, mature miRNAs using multiple miRNA prediction methods. We defined a set of 25 miRNAs differentially expressed under the cold and normal conditions and predicted the molecular functions and biological processes that they involve through Gene Ontology (GO) annotation of their target genes. On the other hand, microarray analysis showed that genes related to mRNA processing and response to stress were overrepresented among the up-regulated genes in cold-stress, but are not directly corresponding to any of the GO molecular functions and biological processes predicted from the differential miRNAs. Using several statistical models including a novel, network-based approach, we found that miRNAs identified in this study, either individually or together, and either directly or indirectly (i.e., mediated by transcription factors), only make minor contribution to the change in gene expression patterns under the low-temperature condition.ConclusionsOur results suggest that the cold-stress response of mRNA expression may be governed mainly through regulatory modes other than miRNA-mediated regulation. MiRNAs in animal brains might act more as developmental regulators than thermal adaptability regulators.