Effect of electron correlation on single strand breaks (SSBs) induced by low energy electron (LEE) has been investigated in a fragment excised from a DNA, viz., 2'-deoxycytidine-3'-monophosphate [3'-dCMPH] molecule in gas phase at DFT-B3LYP/6-31+G(d) accuracy level and using local complex potential based time dependent wave packet (LCP-TDWP) approach. The results obtained, in conjunction with our earlier investigation, show the possibility of SSB at very low energy (0.15 eV) where the LEE transfers from π∗ to σ∗ resonance state which resembles a S(N)2 type mechanism. In addition, for the first time, an indication of quantum mechanical tunneling in strand breaking is seen from the highest anionic bound vibrational state (χ(5)), which may have a substantial role during DNA damage.
The reaction between D + and H 2 plays an important role in astrochemistry at low temperatures and also serves as a prototype for simple ion-molecule reaction. Its groundX 1 A ′ state has a very small thermodynamic barrier (up to 1.8×10 −2 eV) and the reaction proceeds through the formation of an intermediate complex lying within the potential well of depth of at least 0.2 eV thus representing a challenge for dynamical studies. In the present work, we analyze the title reaction within the temperature range of 20 − 100 K by means of ring polymer molecular dynamics (RPMD) and quasi-classical trajectory (QCT) methods over the full-dimensional global potential energy surface developed by Aguado et al. [A. Aguado, O. Roncero, C. Tablero, C. Sanz, and M. Paniagua, J. Chem. Phys., 2000, 112, 1240]. The computed thermal RPMD and QCT rate coefficients are found to be almost independent of temperature and fall within the range of 1.34 − 2.01×10 −9 cm 3 s −1 . They are also in a very good agreement with the previous time-independent quantum mechanical and statistical quantum method calculations. Furthermore, we observe that the choice of asymptotic separation distance between the reactants can markedly alter the rate coefficient in the low temperature regime (20 − 50 K). Therefore it is of utmost importance to correctly assign the value of this parameter for dynamical studies, particularly at very low temperatures of astrochemical importance. We finally conclude that experimental rate measurements for the title reaction are highly desirable in future.
Silver oxide cluster cations (Ag n O m + ) can readily be produced by a number of methods including atmospheric-pressure spark ablation of pure silver electrodes when trace amounts of oxygen are present in the carrier gas. Here we determine the equilibrium geometries of Ag n O m + clusters (n = 1−4; m = 1−5) using accurate coupled cluster with singles and doubles (CCSD) method, while the stabilization energies are calculated with additional perturbative triples correction (CCSD(T)). Although a number of stable states have been identified, our results show that the Ag n O m + clusters with m = 1 are more stable than those with m ≥ 2 due to the absence of the terminally attached O 2 molecule, corroborating recent observations by mass spectrometry. Using the computed structures, we calculate the electrical mobilities of the Ag n O m + clusters and label the values on a respective experimentally determined spectrum in an attempt to better interpret the occurrence of the peaks and troughs in the measurements.
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