A new strain of a novel infectious disease affecting millions of people, caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has recently been declared as a pandemic by the World Health Organization (WHO). Currently, several clinical trials are underway to identify specific drugs for the treatment of this novel virus. The inhibition of the SARS-CoV-2 main protease is necessary for the blockage of the viral replication. Here, in this study, we have utilized a blind molecular docking approach to identify the possible inhibitors of the SARS-CoV-2 main protease, by screening a total of 33 molecules which includes natural products, anti-virals, anti-fungals, anti-nematodes and anti-protozoals. All the studied molecules could bind to the active site of the SARS-CoV-2 protease (PDB: 6Y84), out of which rutin (a natural compound) has the highest inhibitor efficiency among the 33 molecules studied, followed by ritonavir (control drug), emetine (anti-protozoal), hesperidin (a natural compound), lopinavir (control drug) and indinavir (anti-viral drug). All the molecules, studied out here could bind near the crucial catalytic residues, HIS41 and CYS145 of the main protease, and the molecules were surrounded by other active site residues like MET49, GLY143, HIS163, HIS164, GLU166, PRO168, and GLN189. As this study is based on molecular docking, hence being particular about the results obtained, requires extensive wet-lab experimentation and clinical trials under in vitro as well as in vivo conditions. ARTICLE HISTORY
A new strain
of a novel infectious disease affecting millions of people, caused by severe
acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has recently been
declared as a pandemic by the World Health Organization (WHO). Currently,
several clinical trials are underway to identify specific drugs for the
treatment of this novel virus. The inhibition of the SARS-CoV-2 main protease
is necessary for the blockage of the viral replication. Here, in this study, we
have utilized a blind molecular docking approach to identify the possible
inhibitors of the SARS-CoV-2 main protease, by screening a total of 33
molecules which includes natural products, anti-virals, anti-fungals,
anti-nematodes and anti-protozoals. All the studied molecules could bind to the
active site of the SARS-CoV-2 protease (PDB: 6Y84), out of which rutin (a
natural compound) has the highest inhibitor efficiency among the 33 molecules
studied, followed by ritonavir (control drug), emetine (anti-protozoal),
hesperidin (a natural compound), lopinavir (control drug) and indinavir
(anti-viral drug). All the molecules, studied out here could bind near the
crucial catalytic residues, HIS41 and CYS145 of the main protease, and the
molecules were surrounded by other active site residues like MET49, GLY143,
HIS163, HIS164, GLU166, PRO168, and GLN189. As this study is based on molecular
docking, hence being particular about the results obtained, requires extensive
wet-lab experimentation and clinical trials under <i>in vitro</i> as well as <i>in vivo </i>conditions.
Biocompatible quantum dots (QDs) have attracted a lot of attention due to potential biological applications (drug delivery, sensing and diagnosis). Here, we have synthesized 2-4 nm size biocompatible ZnS QDs...
The synthesis of small-sized quantum dots (QDs) (1-10 nm) via the green route has garnered great interest regarding their prospective use in many biological applications (diagnosis, drug delivery and in vivo sensing); this is difficult to achieve using chemical synthesis methods, which produce larger size QD particles and also require hazardous reagents. Here, we synthesized biogenic cadmium sulphide (CdS) QDs using green tea extract as the reducing agent to produce particles that were homogeneous and a smaller size of 2-4 nm. We also elucidated the (a) protein binding, (b) antibacterial use and (c) sensing applications of biogenic CdS QDs in this present work. The biosynthesized CdS QDs were found to have extensive antibacterial activity against both Gram-negative Escherichia coli and Gram-positive Enterococcus faecalis bacterial strains. The introduction of QDs in biological medium can lead to the formation of protein-QD complexes; therefore we investigated the binding interaction of CdS QDs with the carrier protein human serum albumin (HSA) in vitro. The synthesized CdS QDs quenched the intrinsic fluorescence of HSA through a static quenching mechanism and the binding constant (K b ) was in the order of 10 4 M À1 . It was also observed that the presence of biogenic CdS QDs affected the HSA-ligand interactions in vitro. The synthesized CdS made highly effective sensors for tetracycline, rifampicin, and bilirubin with limit of detection (LOD) values of 99, 141 and 29 ng/ml, respectively.
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