It is commonly believed that trees were absent in Scandinavia during the last glaciation and first recolonized the Scandinavian Peninsula with the retreat of its ice sheet some 9000 years ago. Here, we show the presence of a rare mitochondrial DNA haplotype of spruce that appears unique to Scandinavia and with its highest frequency to the west-an area believed to sustain ice-free refugia during most of the last ice age. We further show the survival of DNA from this haplotype in lake sediments and pollen of Trøndelag in central Norway dating back ~10,300 years and chloroplast DNA of pine and spruce in lake sediments adjacent to the ice-free Andøya refugium in northwestern Norway as early as ~22,000 and 17,700 years ago, respectively. Our findings imply that conifer trees survived in ice-free refugia of Scandinavia during the last glaciation, challenging current views on survival and spread of trees as a response to climate changes.

Plant and animal biodiversity can be studied by obtaining DNA directly from the environment. This new approach in combination with the use of generic barcoding primers (metabarcoding) has been suggested as complementary or alternative to traditional biodiversity monitoring in ancient soil sediments. However, the extent to which metabarcoding truly reflects plant composition remains unclear, as does its power to identify species with no pollen or macrofossil evidence. Here, we compared pollen-based and metabarcoding approaches to explore the Holocene plant composition around two lakes in central Scandinavia. At one site, we also compared barcoding results with those obtained in earlier studies with species-specific primers. The pollen analyses revealed a larger number of taxa (46), of which the majority (78%) was not identified by metabarcoding. The metabarcoding identified 14 taxa (MTUs), but allowed identification to a lower taxonomical level. The combined analyses identified 52 taxa. The barcoding primers may favour amplification of certain taxa, as they did not detect taxa previously identified with species-specific primers. Taphonomy and selectiveness of the primers are likely the major factors influencing these results. We conclude that metabarcoding from lake sediments provides a complementary, but not an alternative, tool to pollen analysis for investigating past flora. In the absence of other fossil evidence, metabarcoding gives a local and important signal from the vegetation, but the resulting assemblages show limited capacity to detect all taxa, regardless of their abundance around the lake. We suggest that metabarcoding is followed by pollen analysis and the use of species-specific primers to provide the most comprehensive signal from the environment.

A growing body of evidence implies that the concept of 'treeless tundra' in eastern and northern Europe fails to explain the rapidity of Lateglacial and postglacial tree population dynamics of the region, yet the knowledge of the geographic locations and shifting of tree populations is fragmentary. Pollen, stomata and plant macrofossil stratigraphies from Lake Kurjanovas in the poorly studied eastern Baltic region provide improved knowledge of ranges of north-eastern European trees during the Lateglacial and subsequent plant population responses to the abrupt climatic changes of the Lateglacial/Holocene transition. The results prove the Lateglacial presence of tree populations (Betula, Pinus and Picea) in the eastern Baltic region. Particularly relevant is the stomatal and plant macrofossil evidence showing the local presence of reproductive Picea populations during the Younger Dryas stadial at 12 900-11 700 cal. a BP, occurring along with Dryas octopetala and arctic herbs, indicating semi-open vegetation. The spread of Pinus-Betula forest at ca. 14 400 cal. a BP, the rise of Picea at ca. 12 800 cal. a BP and the re-establishment of Pinus-Betula forest at ca. 11 700 cal. a BP within a span of centuries further suggest strikingly rapid, climate-driven ecosystem changes rather than gradual plant succession on a newly deglaciated land.