We study the satisfiability of string constraints where context-free membership constraints may be imposed on variables. Additionally a variable may be constrained to be a subword of a word obtained by shuffling variables and their transductions. The satisfiability problem is known to be undecidable even without rational transductions. It is known to be NExptime-complete without transductions, if the subword relations between variables do not have a cyclic dependency between them. We show that the satisfiability problem stays decidable in this fragment even when rational transductions are added. It is 2NExptime-complete with context-free membership, and NExptime-complete with only regular membership. For the lower bound we prove a technical lemma that is of independent interest: The length of the shortest word in the intersection of a pushdown automaton (of size O(n)) and n finite-state automata (each of size O(n)) can be double exponential in n.