Population genetics is essential for understanding and managing marine ecosystems, but sampling remains challenging. We demonstrate that high-throughput sequencing of seawater environmental DNA can provide useful estimates of genetic diversity in a whale shark (Rhincodon typus) aggregation. We recover similar mitochondrial haplotype frequencies in seawater compared to tissue samples, reliably placing the studied aggregation in a global genetic context and expanding the applications of environmental DNA to encompass population genetics of aquatic organisms.

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The whale shark is an ideal flagship species for 'citizen science' projects because of its charismatic nature, regular presence at numerous coastal aggregation sites and a growing number of ecotourism ventures focusing on the species. An online database of Whale Shark encounters, identifying individuals based on their unique skin patterning from 1992 to 2014 captured almost 30,000 whale shark encounter reports, comprising more than 6000 individuals identified from 54 countries. In this time the number of known whale shark aggregation sites increased from 13 to 20. Examination of encounters revealed a skewed sexratio bias towards males (overall >66%), high site fidelity amongst individuals with limited movements of sharks between neighbouring countries/regions but no records confirming 2 large, ocean basin-scale migrations. Citizen science has been vital in amassing large spatial and temporal datasets to elucidate key aspects of whale shark life-history and demographics and will continue to provide substantial long-term value.

Article impact statement: Environmental DNA provides habitat-characteristic molecular signatures and can be used efficiently to map marine biodiversity at large spatial scales.

ABSTRACT-The effect of burial due to sudden sediment loading was examined in a mixed Philippine seagrass meadow through the experimental deployment of sediment (0. 2. 4 , 8, and 16 cm deposited over the experimental plots). The responses in shoot density, vertical growth, and branching of the species present were assessed 2. 4, and 10 mo following disturbance. Shoot density responses were strongly species-specific. The large Enhalus acoroides maintained shoot density at all burial treatments, and only showed evidence of decline by the end of the expenment. Thalassia hempnchiiand, to a lesser extent. Cymodocea rotundata showed a sharp decllne In shoot density even at moderate burial treatments, from which they faded to recover. The accompanying species (Halodule uninervis, Syringodiurn isoetifolium, and Cyrnodocea serrulata) showed an initial decline In shoot density followed by recovery. The small Halophila ovalis showed an opportunistic growth in plots receiving intermediate (buried by 4 and 8 cm sediment) disturbance, reaching shoot densities well in excess of those on control plots. The results suggest a pattern of species loss following disturbance by sediment burial corresponding to the sequence, T hemprichii + (C. rotundata. S. isoetifolium, H uninervis) + C. serrulata + E. acoroides. Vertical growth increased significantly for all species with differentiated vertical shoots, except C, serrulata. The examination of the time course of vertical growth imprinted on the shoots of the dominant species, T hemprichii, revealed a rapid response to bunal through increased internodal length, which was maintained over 8 mo following the disturbance. The resulting cumulative vertical growth along the experiment was linearly correlated with the degree of burial in~posed on the plants. Branching of vertical shoots also increased significantly (73 to 96%, depending on the species) with burial. Experimental burial induced changes in shoot age distribution of some of the species, involving rearrangements, through selective mortality or recruitment, of the contribution of young shoots to the populations. The results obtained show major differences in species response to small-scale disturbance, closely linked to predictions derived from consideration of species growth rate and size, and provide evidence of the importance of small-scale disturbance in the maintenance of multispecific seagrass meadows.