Treatment of rabbit sarcoplasmic reticulum Ca
2؉ATPase with a variety of proteases, including elastase, proteinase K, and endoproteinases Asp-N and Glu-C, results in accumulation of soluble fragments starting close to the ATPase phosphorylation site Asp 351 and ending in the Lys 605 -Arg 615 region, well before the conserved sequences generally described as constituting the "hinge" region of this P-type ATPase (residues 670 -760). These fragments, designated as p29/30, presumably originate from a relatively compact domain of the cytoplasmic head of the ATPase. They retain two structural characteristics of intact Ca 2؉ -ATPase as follows: high sensitivity of peptidic bond Arg 505 -Ala 506 to trypsin cleavage, and high reactivity of lysine residue Lys 515 toward the fluorescent label fluorescein 5-isothiocyanate. Regarding functional properties, these fragments retain the ability to bind nucleotides, although with reduced affinity compared with intact Ca 2؉ -ATPase. The fragments also bind Nd 3؉ ions, leaving open the possibility that these fragments could contain the metal-binding site(s) responsible for the inhibitory effect of lanthanide ions on ATPase activity. The p29/30 soluble domain, like similar proteolytic fragments that can be obtained from other P-type ATPases, may be useful for obtaining threedimensional structural information on the cytosolic portion of these ATPases, with or without bound nucleotides. From our findings we infer that a real hinge region with conformational flexibility is located at the C-terminal boundary of p29/30 (rather than in the conserved region of residues 670 -760); we also propose that the ATP-binding cleft is mainly located within the p29/30 domain, with the phosphorylation site strategically located at the N-terminal border of this domain.The detailed structure of membrane proteins is only known in a few cases. Among P-type ATPases, which are responsible for active cation transport, the best structure to date is only known to about 14 Å resolution, from cryo-electron microscopy; this is for Ca 2ϩ -ATPase, which catalyzes uptake of Ca 2ϩ from the cytosol to the endoplasmic or sarcoplasmic Ca 2ϩ -storing compartment (1-3). However, large three-dimensional crystals of the protein are not available as yet, and the ATPase structure has been mainly deduced from electron microscopy studies of two-dimensional crystals (3-6), combined with studies by other techniques like chemical labeling, Förster-type resonance energy transfer, immunoreactivity of antibodies with various epitopes, site-directed mutagenesis, and proteolysis studies (reviewed in Refs. 7-9). By comparing structures of Ca 2ϩ -ATPase with and without bound nucleotide, suggestions have been made concerning the likely location of the ATP-binding site in the cytoplasmic portion of this pump (10), but the actual structure of the ATP-binding site and the mechanism of ATP hydrolysis are still largely unknown. Nevertheless, it has been hypothesized that this region of the Ca 2ϩ -ATPase might be organized like water-soluble ...