Leishmaniasis is a tropical disease found in more than 90 countries. The drugs available to treat this disease have nonspecific action and high toxicity. In order to develop novel therapeutic alternatives to fight this ailment, pteridine reductase 1 (PTR1) and dihydrofolate reductase-thymidylate synthase (DHF-TS) have been targeted, once
Leishmania
is auxotrophic for folates. Although PTR1 and DHFR-TS from other protozoan parasites have been studied, their homologs in
Leishmania chagasi
have been poorly characterized. Hence, this work describes the optimal conditions to express the recombinant
Lc
PTR1 and
Lc
DHFR-TS enzymes, as well as balanced assay conditions for screening. Last but not the least, we show that 2,4 diaminopyrimidine derivatives are low-micromolar competitive inhibitors of both enzymes (
Lc
PTR1 Ki = 1.50–2.30 µM and
Lc
DHFR Ki = 0.28–3.00 µM) with poor selectivity index. On the other hand, compound
5
(2,4-diaminoquinazoline derivative) is a selective
Lc
PTR1 inhibitor (Ki = 0.47 µM, selectivity index = 20).
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