Hyaluronidases are enzymes that degrade hyaluronan, an important component of the extracellular matrix. The mammalian hyaluronidases are considered to be involved in many (patho)physiological processes like fertilization, tumor growth, and metastasis. Bacterial hyaluronidases, also termed hyaluronate lyases, contribute to the spreading of microorganisms in tissues. Such roles for hyaluronidases suggest that inhibitors could be useful pharmacological tools. Potent and selective inhibitors are not known to date, although L-ascorbic acid has been reported to be a weak inhibitor of Streptococcus pneumoniae hyaluronate lyase (SpnHL). The x-ray structure of SpnHL complexed with L-ascorbic acid has been elucidated suggesting that additional hydrophobic interactions might increase inhibitory activity. Here we show that L-ascorbic acid 6-hexadecanoate (Vcpal) is a potent inhibitor of both streptococcal and bovine testicular hyaluronidase (BTH). Vcpal showed strong inhibition of Streptococcus agalactiae hyaluronate lyase with an IC 50 of 4 M and weaker inhibition of SpnHL and BTH with IC 50 values of 100 and 56 M, respectively. To date, Vcpal has proved to be one of the most potent inhibitors of hyaluronidase. We also determined the x-ray structure of the SpnHL-Vcpal complex and confirmed the hypothesis that additional hydrophobic interactions with Phe-343, His-399, and Thr-400 in the active site led to increased inhibition. A homology structural model of BTH was also generated to suggest binding modes of Vcpal to this hyaluronidase. The long alkyl chain seemed to interact with an extended, hydrophobic channel formed by mostly conserved amino acids Ala-84, Leu-91, Tyr-93, Tyr-220, and Leu-344 in BTH.

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Potent and specific inhibitors of hyaluronidases, a group of enzymes preferentially catalysing the hydrolysis of hyaluronic acid, are not known so far. Such compounds could be useful as pharmacological tools for studying the physiological and pathophysiological role of both hyaluronan and hyaluronidases. The effects of sulphated and non-sulphated structurally different oligosaccharides on bovine testicular hyaluronidase, hyaluronidase from bee venom and hyaluronate lyase from Streptococcus agalactiae (hylB (4755)) were studied with the Morgan-Elson reaction. Several active compounds were identified within a series of sulphated beta-(1,4)-galacto-oligosaccharides. The determined IC (50) values of these sulphated oligosaccharides ranged from 4 microM to 630 microM for all hyaluronan-degrading enzymes. Sulphated oligosaccharides like verbascose, planteose and neomycin showed comparable inhibition on all hyaluronidases, thereby possessing 100 - 500 times the activity of the widely accepted hyaluronidase inhibitor apigenin.

Hyaluronidases depolymerize hyaluronic acid, an important component of the extracellular matrix. Bacterial hyaluronan lyases (EC 4.2.2.1) contribute to the spreading of microorganisms in tissues. Potent and selective inhibitors are not known up to now, but would be interesting pharmacological tools and potential drugs for the treatment of bacterial infections. Starting from two crystal structures of streptococcal hyaluronan lyases, a homology model of the S. agalactiae strain 4755 enzyme hylB 4755 was generated and applied to structure-based inhibitor design with the de novo design program LUDI. The databases LeadQuest Vol. 1&2, Accelrys and ChemACX containing 228000 compounds were screened resulting in 1275 hits. Based on high LUDI scores, synthetic feasibility and commercial availability, 19 of these hits were investigated for inhibition of hylB 4755 . 13 compounds were active in the milli-and submillimolar range. 1,3-diacetylbenzimidazole-2-thione with IC 50 values of 5 mM and 160 mM at physiological and optimum pH, respectively, is one of the two most potent inhibitors of hyaluronan lyases known to date. Depending on the LUDI sphere radius, it was docked in two different poses with similar scores. To analyze whether the hits represent (physico)chemical properties typical for drugability and optimal pharmacokinetics, the distributions of six descriptors within all hits from LeadQuest and ChemACX and within the original databases were compared. Generally, the hit distributions represent the type of the original ones, but are narrower with slightly different medians. More than 80% of the hits have molecular weights between 150 and 350, XLOGP values between 1 and 4, one H-donor, 1 -3 H-acceptors, 0 -3 rotatable bonds and 1 -3 rings. In conclusion, the application of LUDI to both databases has led to the accumulation of relatively rigid, drug-like molecules.