While the genome sequences of different crops have been published and annotated, relatively little is known about the transcriptional networks that regulate gene expression. There are different ways of finding significant motifs in genome sequences, evolutionary motif finding algorithms being one of them. The work presented in this paper uses Differential Evolution (DE) Algorithm to discover new motifs in rice genome sequences and aims to provide an intuitive wizard to analyse the micro-array analysis of expression patterns (motifs) for the queried genes. The used DE algorithm involves crossover operation with fine tuning. Further, to search for already known motifs parallel version of adaptive hash based pattern matching algorithm has been implemented. The study is conducted on rice genome sequences for twelve chromosomes each consisting of approximately 70000 genome sequences. In this paper, experimental results provide a comparison of serial and parallel version of the algorithm applied for the same dataset which shows that parallel implementation improves the performance by almost 25-30% to search the patterns in genome sequences and provide a list of newly discovered significant motifs.