A novel, anaerobically grown microbial biofilm, scraped from the inner surface of a borehole, 1474 m below land surface within a South African, Witwatersrand gold mine, contains framboidal pyrite. Water flowing from the borehole had a temperature of 30.9 degrees C, a pH of 7.4, and an Eh of -50 mV. Examination of the biofilm using X-ray diffraction, field emission gun scanning electron microscope equipped for energy dispersive X-ray microanalysis demonstrated that the framboids formed within a matrix of bacteria and biopolymers. Focused ion beam sectioning of framboids followed by NEXAFS measurements using both scanning transmission X-ray microscopy and X-ray photoelectron emission microscopy revealed that the pyrite crystals grew within an organic carbon matrix consisting of exopolysaccharides and possibly extracellular DNA, which is intuitively important in sulfide mineral diagenesis. Growth of individual pyrite crystals within the framboid occurred inside organic templates confirms the association between framboidal pyrite and organic materials in low-temperature diagenetic environments and the important role of microenvironments in biofilms in regulating geochemical cycles.
A biofilm sample was collected from an anaerobic water and gasflowing borehole, 1.474 km below land surface in the Evander Au mine, Republic of South Africa. The biofilm was 27 wt% ZnS, which was ∼2 × 10 7 times more concentrated than the dissolved Zn measured in the borehole water. X-Ray diffraction indicated that the Zn was present in the form of fine grained, 4.7 ± 0.9 nm particles with smaller amounts of pyrite (FeS 2 ). Scanning electron microscopy, coupled with energy-dispersive X-ray spectroscopy confirmed the identity of these minerals in the biofilm. Using transmission electron microscopy, the fine-grained ZnS minerals were found to coat the 1 μm-diameter rod-shaped bacteria that made up the primary substructure of the biofilm. The FeS 2 was present as framboids (spherical aggregates of 0.5-1 μm FeS 2 crystals) up to 10 μm in diameter and as large, 2-3 μm euhedral crystals that were not nucleated on the bacterial surfaces, but were found within the biofilm. Analyses of 16S rDNA utilizing clone libraries and a phylochip indicates that the ZnS rich biofilm is dominated by methanogens with a significant sulfate-reducing bacterial population and minor sulfide and CH 4 -oxidizing chemolithotrophs. This biofilm community is sustained by sulfate, bicarbonate and H 2 -bearing paleometeoric water.
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