No abstract

The structural shift of a DNA hairpin-dimer is as important as the DNA sequence in determining the fluorescent properties of DNA-stabilized silver nanoclusters (DNA/AgNCs).

Boron nitride nanotubes (BNNTs) have attracted significant interest because of the remarkable difference in their physical properties compared with carbon nanotubes and their far-reaching potential applications, including electrical insulators; thermally conducting, catalytic, and piezoelectric materials; and neutron absorbers. Despite their unique physical properties, the bundling and insolubility of BNNTs in water because of its substantial van der Waals attraction and hydrophobicity, respectively, give rise to many limitations in practical applications. Here, we present a new way to produce a highly stable BNNT dispersion by the noncovalent functionalization of the BNNT surface in water. The noncovalently functionalized BNNTs (p-BNNTs) have been found to be highly stable in water for a long time (>1 year) and easily water-redispersible by mild vortex mixing for a few minutes even after freeze-drying at −45 °C. The p-BNNTs were cylindrically encapsulated with polymerizable surfactants (BNNT diameter = ca. 3 nm and surfactant thickness = 0.8 nm).

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Greater understanding of the mutual influence between DNA and the associated nanomaterial on the properties of each other can provide alternative strategies for designing and developing DNA nanomachines. DNA secondary structures are essential for encapsulating highly emissive silver nanoclusters (DNA/AgNCs). Likewise, AgNCs stabilize secondary DNA structures, such as hairpin DNA, duplex DNA, and parallel-motif DNA triplex. In this study, we found that the fluorescence of AgNCs encapsulated within a Hoogsteen triplex DNA structure can be turned on and off in response to pH changes. We also show that AgNCs can act as nanoscale rivets, linking two functionally distinctive DNA nanostructures. For instance, we found that a Hoogsteen triplex DNA structure with a seven-cytosine loop encapsulates red fluorescent AgNCs. The red fluorescence faded under alkaline conditions, whereas the fluorescence was restored in a near-neutral environment. Hairpin DNA and random DNA structures did not exhibit this pH-dependent AgNCs fluorescence. A fluorescence lifetime measurement and a small-angle X-ray scattering analysis showed that the triplex DNA-encapsulated AgNCs were photophysically convertible between bright and dark states. An in-gel electrophoresis analysis indicated that bright and dark convertibility depended on the AgNCs-riveted dimerization of the triplex DNAs. Moreover, we found that AgNCs rivet the triplex DNA and hairpin DNA to form a heterodimer, emitting orange fluorescence. Our findings suggest that AgNCs between two cytosine-rich loops can be used as nanorivets in designing noncanonical DNA origami beyond Watson–Crick base pairing.