There is a need to augment the mechanical strength of titanium alloys to take advantage of their low mass density for structural applications. Herein, the reinforcement potential of boron nitride nanotube (BNNT), a high‐aspect‐ratio nanomaterial with exceptional strength and thermal stability, to engineer nanocomposites based on Ti–6Al–4 V alloy, is interrogated. The stress‐transfer behavior at the matrix/filler interface is programmed by tweaking the extent of chemical reactions during sintering. A twofold improvement in indentation resistance after integrating BNNTs in the alloy due to the crack bridging mechanism is reported. There is a further 50% enhancement in hardness and stiffness as the sintering temperature is raised from 750 to 950 °C. This improvement is attributed to the escalated formation of TiN and TiB phases due to matrix–nanotube interfacial reactions at elevated temperatures. A novel indentation‐based in situ trench testing technique is employed to study the subsurface deformation mechanisms activated in the bulk of the composite specimen. The ceramic interphases promote the indentation resistance by acting as crack deflectors in the microstructure, which promotes the dissipation of mechanical work. These insights can be applied to designing Ti‐BNNT microstructures with desired mechanical properties and deformation characteristics.