This contribution presents the description and interpretation of carbonate microfacies of the San Juan Formation (Ordovician) at the Niquivil section, considering the stratigraphical interval between the Oepikodus evae and Oepikodus intermedius conodont zones. The distribution of the microfacies and the conodonts assemblages allow us to identify different sub-environments within the late Floian carbonate ramp of the Central Precordillera. Five microfacies were recognized from the base to the top: M1 Bioclastic mudstone-wackestone; M2 Bioclastic-peloidal wackestone; M3 Intra-bioclastic wackestone; M4 Intra-bioclastic packstone; M5 Peloidal grainstone. The vertical distribution of these microfacies indicates a shallowing trend of the carbonate ramp in the Niquivil section for this temporal interval, which suggests a middle ramp environment with low energy, without wave action, and that evolved towards the middle-inner ramp environment with more energy by wave action and development of tempestites.