Anaerobic growth of Pseudomonas aeruginosa PAO1 was affected by quorum sensing. Deletion of genes that produce N-acyl-L-homoserine lactone signals resulted in an increase in denitrification activity, which was repressed by exogenous signal molecules. The effect of the las quorum-sensing system was dependent on the rhl quorum-sensing system in regulating denitrification.Bacteria regulate their metabolism to adapt to various conditions by sensing environmental signals. Under anoxic conditions, many bacteria are able to use N-oxides as terminal electron acceptors. Pseudomonas aeruginosa is a denitrifying bacterium capable of anaerobic growth by utilizing N-oxides such as nitrate (NO 3 Ϫ ) and nitrite (NO 2 Ϫ ). Denitrification is induced under low-oxygen conditions when N-oxides are also present (1, 9, 11).Recent studies on bacteria have revealed new types of environmental signals known as cell-to-cell communication signals (25). P. aeruginosa is reported to control gene expression globally in response to cell density by utilizing N-acyl-L-homoserine lactone (AHL) signals. This cell-density-dependent regulation is termed quorum sensing (5). P. aeruginosa possesses at least two quorum-sensing systems: the LasR-LasI (las) and RhlR-RhlI (rhl) systems (20). LasI directs the synthesis of the AHL signal N-(3-oxododecanoyl)-L-homoserine lactone (3-oxo-C 12 -HSL) (17, 18), and RhlI directs the synthesis of another AHL signal, N-butyryl-L-homoserine lactone (C 4 -HSL) (19). The transcription regulatory proteins, LasR (6) and RhlR (16), are specifically activated by 3-oxo-C 12 -HSL and C 4 -HSL, respectively. Previous studies have indicated that production of virulence factors, such as protease, exotoxin A, rhamnolipids, and siderophores, is regulated by quorum sensing in P. aeruginosa (7,12,26), suggesting that quorum sensing is important in the pathogenesis of infection with this bacterium.Recent transcriptomic and proteomic studies indicate that quorum sensing is a global regulation system in P. aeruginosa (3,23,28). From these findings, it can be presumed that quorum-sensing systems have ecologically important roles in addition to the control of pathogenesis for the bacterium. For example, recent work suggests that quorum sensing regulates the activities of denitrification enzymes. In a recent study by Yoon et al. (31), the authors reported that levels of denitrifying enzyme activities of anaerobically grown P. aeruginosa cells are higher for an rhlR mutant than for its parent strain in an in vitro system. We were interested in further characterizing the potential anaerobic regulation of denitrification by the quorum-sensing system. Here we present a comprehensive analysis of the impact of quorum sensing on the denitrification pathway under anaerobic conditions by using in vivo and in vitro analyses.Effect of quorum sensing on denitrification activity. P. aeruginosa PAO1 was cultured anaerobically in 17-ml Hungate tubes containing 5 ml Luria-Bertani (LB) medium supplemented with 100 mM KNO 3 with shaking at 200 rpm at 37...

The fungus Aspergillus nidulans reduces nitrate to ammonium and simultaneously oxidizes ethanol to acetate to generate ATP under hypoxic conditions in a mechanism called ammonia fermentation (Takasaki, K. et al.. J. Biol. Chem. 2004, 279, 12414-12420). To elucidate the mechanism, the fungus was cultured under normoxic and hypoxic (ammonia fermenting) conditions, intracellular proteins were resolved by 2-DE, and 332 protein spots were identified using MALDI MS after tryptic digestion. Alcohol and aldehyde dehydrogenases that play key roles in oxidizing ethanol were produced at the basal level under hypoxic conditions but were obviously provoked by ethanol under normoxic conditions. Enzymes involved in gluconeogenesis, as well as the tricarboxylic and glyoxylate cycles, were downregulated. These results indicate that the mechanism of fungal energy conservation is altered under hypoxic conditions. The results also showed that proteins in the pentose phosphate pathway as well as the metabolism of both nucleotide and thiamine were upregulated under hypoxic conditions. Levels of xanthine and hypoxanthine, deamination products of guanine and adenine were increased in DNA from hypoxic cells, indicating an association between hypoxia and intracellular DNA base damage. This study is the first proteomic comparison of the hypoxic responses of A. nidulans.

Background: Bioethanol isolated from lignocellulosic biomass represents one of the most promising renewable and carbon neutral alternative liquid fuel sources. Enzymatic saccharification using cellulase has proven to be a useful method in the production of bioethanol. The filamentous fungi Acremonium cellulolyticus and Trichoderma reesei are known to be potential cellulase producers. In this study, we aimed to reveal the advantages and disadvantages of the cellulase enzymes derived from these fungi.

Objective. Antibodies against 3-hydroxy-3-methylglutaryl-coenzyme A reductase (HMGCR) have recently been associated with immune-mediated necrotizing myopathy, especially in patients with statin exposure. As the data are very limited concerning phenotypes and treatment in paediatric patients, we aimed to identify the paediatric patients positive for anti-HMGCR antibodies and clarify their features and therapeutic strategies.Methods. We screened 62 paediatric patients who were clinically and/or pathologically suspected to have inflammatory myopathy for anti-HMGCR antibodies. We further re-assessed the clinical and histological findings and the treatment of the patients positive for anti-HMGCR antibodies.Results. We identified nine paediatric patients with anti-HMGCR antibodies (15%). This was more frequent than anti-signal recognition particle antibodies (four patients, 6%) in our cohort. The onset age ranged from infancy to 13 years. Five patients were initially diagnosed with muscular dystrophy, including congenital muscular dystrophy. Most patients responded to high-dose corticosteroid therapy first but often needed adjuvant immunosuppressants to become stably controlled.Conclusion.Paediatric necrotizing myopathy associated with anti-HMGCR antibodies may not be very rare. Phenotypes are similar to those of adult patients, but a chronic slowly progressive course may be more frequent. Some patients share the clinicopathological features of muscular dystrophy indicating that recognizing inflammatory aetiology would be challenging without autoantibody information. On the other hand, most patients responded to treatment, especially those who were diagnosed early. Our results suggest the importance of early autoantibody testing in paediatric patients who have manifestations apparently compatible with muscular dystrophy in addition to those who have typical features of inflammatory myopathy.

Although branched-chain amino acids are synthesized as building blocks of proteins, we found that the fungus Aspergillus nidulans excretes them into the culture medium under hypoxia. The transcription of predicted genes for synthesizing branched-chain amino acids was upregulated by hypoxia. A knockout strain of the gene encoding the large subunit of acetohydroxy acid synthase (AHAS), which catalyzes the initial reaction of the synthesis, required branched-chain amino acids for growth and excreted very little of them. Pyruvate, a substrate for AHAS, increased the amount of hypoxic excretion in the wild-type strain. These results indicated that the fungus responds to hypoxia by synthesizing branched-chain amino acids via a de novo mechanism. We also found that the small subunit of AHAS regulated hypoxic branched-chain amino acid production as well as cellular AHAS activity. The AHAS knockout resulted in higher ratios of NADH/NAD ؉ and NADPH/NADP ؉ under hypoxia, indicating that the branched-chain amino acid synthesis contributed to NAD ؉ and NADP ؉ regeneration. The production of branched-chain amino acids and the hypoxic induction of involved genes were partly repressed in the presence of glucose, where cells produced ethanol and lactate and increased levels of lactate dehydrogenase activity. These indicated that hypoxic branched-chain amino acid synthesis is a unique alternative mechanism that functions in the absence of glucose-to-ethanol/lactate fermentation and oxygen respiration.