Advanced in situ techniques based on electrons and X-rays are increasingly used to gain insights into fundamental processes in liquids. However, probing liquid samples with ionizing radiation changes the solution chemistry under observation. In this work, we show that a radiation-induced decrease in pH does not necessarily correlate to an increase in acidity of aqueous solutions. Thus, pH does not capture the acidity under irradiation. Using kinetic modeling of radiation chemistry, we introduce alternative measures of acidity (radiolytic acidity π* and radiolytic ion product K W*), that account for radiation-induced alterations of both H+ and OH– concentration. Moreover, we demonstrate that adding pH-neutral solutes such as LiCl, LiBr, or LiNO3 can trigger a significant change in π*. This provides a huge parameter space to tailor the acidity for in situ experiments involving ionizing radiation, as present in synchrotron facilities or during liquid-phase electron microscopy.

Bacterial biomineralization is a widespread process that affects cycling of metals in the environment. Functionalized bacterial cell surfaces and exopolymers are thought to initiate mineral formation, however, direct evidences are hampered by technical challenges. Here, we present a breakthrough in the use of liquid-cell scanning transmission electron microscopy to observe mineral growth on bacteria and the exopolymers they secrete. Two Escherichia coli mutants producing distinct exopolymers are investigated. We use the incident electron beam to provoke and observe the precipitation of Mn-bearing minerals. Differences in the morphology and distribution of Mn precipitates on the two strains reflect differences in nucleation site density and accessibility. Direct observation under liquid conditions highlights the critical role of bacterial cell surface charges and exopolymer types in metal mineralization. This has strong environmental implications because biofilms structured by exopolymers are widespread in nature and constitute the main form of microbial life on Earth.

Bio-induced precipitation of lead-bearing minerals is investigated in bacterial biofilms grown by Shewanella oneidensis MR-1 under aerobic conditions. Under the different conditions investigated, thermodynamic calculations establish that the stable mineral phases expected to precipitate are either wulfenite PbMoO 4 or cerussite PbCO 3. However, observations by electron microscopy show that the first solids precipitated within hours at the experimental solution/biofilm interface are crystals of about 20 nm in diameter of pyromorphite Pb 5 (PO 4) 3 (OH,Cl). In Mo-bearing systems, the precipitation of the thermodynamicallypredicted wulfenite phase is delayed compared to the abiotic experiment and is observed only after 7 days of lead exposure. The initial lead phosphate crystals observed on the extracellular polymeric substances are assumed to result from concurrent local abundances of adsorbed Pb 2+ ions and phosphate groups released by metabolically active cells. Scanning electron microscopy observations of samples milled by focused ion beam reveal effective diffusionlimited precipitation of pyromorphite within the well-preserved biofilm porosity.