The current emphasis on global climate studies has led the scientific community to set up a number of sites for measuring the long‐term biosphere‐atmosphere net CO2 exchange (net ecosystem exchange, NEE). Partitioning this flux into its elementary components, net assimilation (FA), and respiration (FR), remains necessary in order to get a better understanding of biosphere functioning and design better surface exchange models. Noting that FR and FA have different isotopic signatures, we evaluate the potential of isotopic 13CO2 measurements in the air (combined with CO2 flux and concentration measurements) to partition NEE into FR and FA on a routine basis. The study is conducted at a temperate coniferous forest where intensive isotopic measurements in air, soil, and biomass were performed in summer 1997. The multilayer soil‐vegetation‐atmosphere transfer model MuSICA is adapted to compute 13CO2 flux and concentration profiles. Using MuSICA as a “perfect” simulator and taking advantage of the very dense spatiotemporal resolution of the isotopic data set (341 flasks over a 24‐hour period) enable us to test each hypothesis and estimate the performance of the method. The partitioning works better in midafternoon when isotopic disequilibrium is strong. With only 15 flasks, i.e., two 13CO2 nighttime profiles (to estimate the isotopic signature of FR) and five daytime measurements (to perform the partitioning) we get mean daily estimates of FR and FA that agree with the model within 15–20%. However, knowledge of the mesophyll conductance seems crucial and may be a limitation to the method.

A numerical model was developed for the simulation of vertical profiles of water content and stable isotope concentration in a drying soil. It allows the calculation of stationary isotopic profiles occurring in steady state conditions as well as the evolution of the profiles at the first and second drying stages in transient conditions for any initial profile, atmospheric conditions, and temperature distribution. A parameterization of the kinetic fractionation in relation to surface water content is proposed to allow the simulation of its evolution during the development of a dry superficial layer in nonsteady conditions. After a qualitative study of the isotopic enrichment the model creates, it is validated by comparison with existing analytical solutions which are limited to the stationary state. A numerical application in nonsteady conditions allowed us to simulate the evolution of the isotopic profile for a drying soil and to compare it with the stationary profile. The discussion emphasizes the lack of experimental examination of the liquid‐vapor isotopic equilibrium and the liquid phase isotopic homogeneity in porous media, both major assumptions in the theory of water and stable isotope transfers in soils.

Recently available isotope ratio infrared spectroscopy can directly measure the isotopic composition of atmospheric water vapour (δ(18) O, δ(2) H), overcoming one of the main limitations of isotope ratio mass spectrometry (IRMS) methods. Calibrating these gas-phase instruments requires the vapourisation of liquid standards since primary standards in principle are liquids. Here we test the viability of calibrating a wavelength-scanned cavity ring-down spectroscopy (CRDS) instrument with vapourised liquid standards. We also quantify the dependency of the measured isotope values on the water concentration for a range of isotopic compositions. In both liquid and vapour samples, we found an increase in δ(18) O and δ(2) H with water vapour concentration. For δ(18) O, the slope of this increase was similar for liquid and vapour, with a slight positive relationship with sample δ-value. For δ(2) H, we found diverging patterns for liquid and vapour samples, with no dependence on δ-value for vapour, but a decreasing slope for liquid samples. We also quantified tubing memory effects to step changes in isotopic composition, avoiding concurrent changes in the water vapour concentration. Dekabon tubing exhibited much stronger, concentration-dependent, memory effects for δ(2) H than stainless steel or perfluoroalkoxy (PFA) tubing. Direct vapour measurements with CRDS in a controlled experimental chamber agreed well with results obtained from vapour simultaneously collected in cold traps analysed by CRDS and IRMS. We conclude that vapour measurements can be calibrated reliably with liquid standards. We demonstrate how to take the concentration dependencies of the δ-values into account. Copyright © 2010 John Wiley & Sons, Ltd.